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GGT3P (gamma-glutamyltransferase 3 pseudogene)

Identity

Alias_namesGGT3
gamma-glutamyltransferase 3
Other alias
HGNC (Hugo) GGT3P
LocusID (NCBI) 2679
Atlas_Id 63772
Location 22q11.21  [Link to chromosome band 22q11]
Location_base_pair Starts at 18773689 and ends at 18791961 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GGT3P   4252
Cards
Entrez_Gene (NCBI)GGT3P  2679  gamma-glutamyltransferase 3 pseudogene
AliasesGGT3
GeneCards (Weizmann)GGT3P
Ensembl hg19 (Hinxton)ENSG00000197421 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000197421 [Gene_View]  chr22:18773689-18791961 [Contig_View]  GGT3P [Vega]
ICGC DataPortalENSG00000197421
TCGA cBioPortalGGT3P
AceView (NCBI)GGT3P
Genatlas (Paris)GGT3P
WikiGenes2679
SOURCE (Princeton)GGT3P
Genetics Home Reference (NIH)GGT3P
Genomic and cartography
GoldenPath hg38 (UCSC)GGT3P  -     chr22:18773689-18791961 -  22q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GGT3P  -     22q11.21   [Description]    (hg19-Feb_2009)
EnsemblGGT3P - 22q11.21 [CytoView hg19]  GGT3P - 22q11.21 [CytoView hg38]
Mapping of homologs : NCBIGGT3P [Mapview hg19]  GGT3P [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC108264 BC143607
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GGT3P
Cluster EST : UnigeneHs.595809 [ NCBI ]
CGAP (NCI)Hs.595809
Alternative Splicing GalleryENSG00000197421
Gene ExpressionGGT3P [ NCBI-GEO ]   GGT3P [ EBI - ARRAY_EXPRESS ]   GGT3P [ SEEK ]   GGT3P [ MEM ]
Gene Expression Viewer (FireBrowse)GGT3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2679
GTEX Portal (Tissue expression)GGT3P
Human Protein AtlasENSG00000197421-GGT3P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGU5
Splice isoforms : SwissVarA6NGU5
Catalytic activity : Enzyme2.3.2.2 [ Enzyme-Expasy ]   2.3.2.22.3.2.2 [ IntEnz-EBI ]   2.3.2.2 [ BRENDA ]   2.3.2.2 [ KEGG ]   
PhosPhoSitePlusA6NGU5
Domaine pattern : Prosite (Expaxy)G_GLU_TRANSPEPTIDASE (PS00462)   
Domains : Interpro (EBI)GGT_peptidase    Ntn_hydrolases_N   
Domain families : Pfam (Sanger)G_glu_transpept (PF01019)   
Domain families : Pfam (NCBI)pfam01019   
Conserved Domain (NCBI)GGT3P
DMDM Disease mutations2679
Blocks (Seattle)GGT3P
SuperfamilyA6NGU5
Human Protein Atlas [tissue]ENSG00000197421-GGT3P [tissue]
Peptide AtlasA6NGU5
IPIIPI00788054   IPI00976936   
Protein Interaction databases
DIP (DOE-UCLA)A6NGU5
IntAct (EBI)A6NGU5
FunCoupENSG00000197421
BioGRIDGGT3P
STRING (EMBL)GGT3P
ZODIACGGT3P
Ontologies - Pathways
QuickGOA6NGU5
Ontology : AmiGOgamma-glutamyltransferase activity  proteolysis  glutathione metabolic process  glutathione biosynthetic process  glutathione catabolic process  integral component of membrane  leukotriene biosynthetic process  anchored component of external side of plasma membrane  glutathione hydrolase activity  extracellular exosome  
Ontology : EGO-EBIgamma-glutamyltransferase activity  proteolysis  glutathione metabolic process  glutathione biosynthetic process  glutathione catabolic process  integral component of membrane  leukotriene biosynthetic process  anchored component of external side of plasma membrane  glutathione hydrolase activity  extracellular exosome  
NDEx NetworkGGT3P
Atlas of Cancer Signalling NetworkGGT3P
Wikipedia pathwaysGGT3P
Orthology - Evolution
OrthoDB2679
GeneTree (enSembl)ENSG00000197421
Phylogenetic Trees/Animal Genes : TreeFamGGT3P
HOVERGENA6NGU5
HOGENOMA6NGU5
Homologs : HomoloGeneGGT3P
Homology/Alignments : Family Browser (UCSC)GGT3P
Gene fusions - Rearrangements
Tumor Fusion PortalGGT3P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGGT3P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GGT3P
dbVarGGT3P
ClinVarGGT3P
1000_GenomesGGT3P 
Exome Variant ServerGGT3P
ExAC (Exome Aggregation Consortium)ENSG00000197421
GNOMAD BrowserENSG00000197421
Genetic variants : HAPMAP2679
Genomic Variants (DGV)GGT3P [DGVbeta]
DECIPHERGGT3P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGGT3P 
Mutations
ICGC Data PortalGGT3P 
TCGA Data PortalGGT3P 
Broad Tumor PortalGGT3P
OASIS PortalGGT3P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGGT3P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GGT3P
DgiDB (Drug Gene Interaction Database)GGT3P
DoCM (Curated mutations)GGT3P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GGT3P (select a term)
intoGenGGT3P
Cancer3DGGT3P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGGT3P
MedgenGGT3P
Genetic Testing Registry GGT3P
NextProtA6NGU5 [Medical]
TSGene2679
GENETestsGGT3P
Target ValidationGGT3P
Huge Navigator GGT3P [HugePedia]
snp3D : Map Gene to Disease2679
BioCentury BCIQGGT3P
ClinGenGGT3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2679
Clinical trialGGT3P
Miscellaneous
canSAR (ICR)GGT3P (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGGT3P
EVEXGGT3P
GoPubMedGGT3P
iHOPGGT3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:43:41 CET 2017

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