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GGT6 (gamma-glutamyltransferase 6)

Identity

Alias_namesgamma-glutamyltransferase 6 homolog (rat)
Alias_symbol (synonym)FLJ90165
Other alias-
HGNC (Hugo) GGT6
LocusID (NCBI) 124975
Atlas_Id 63773
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4460222 and ends at 4463891 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GGT6 (17p13.2) / AC091153.1 ()

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GGT6   26891
Cards
Entrez_Gene (NCBI)GGT6  124975  gamma-glutamyltransferase 6
Aliases
GeneCards (Weizmann)GGT6
Ensembl hg19 (Hinxton)ENSG00000167741 [Gene_View]  chr17:4460222-4463891 [Contig_View]  GGT6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000167741 [Gene_View]  chr17:4460222-4463891 [Contig_View]  GGT6 [Vega]
ICGC DataPortalENSG00000167741
TCGA cBioPortalGGT6
AceView (NCBI)GGT6
Genatlas (Paris)GGT6
WikiGenes124975
SOURCE (Princeton)GGT6
Genetics Home Reference (NIH)GGT6
Genomic and cartography
GoldenPath hg19 (UCSC)GGT6  -     chr17:4460222-4463891 -  17p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GGT6  -     17p13.2   [Description]    (hg38-Dec_2013)
EnsemblGGT6 - 17p13.2 [CytoView hg19]  GGT6 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIGGT6 [Mapview hg19]  GGT6 [Mapview hg38]
OMIM612341   
Gene and transcription
Genbank (Entrez)AA661618 AI284219 AK074646 AK129501 AK296645
RefSeq transcript (Entrez)NM_001122890 NM_001288702 NM_001288703 NM_001288704 NM_153338
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010718 NW_004929405
Consensus coding sequences : CCDS (NCBI)GGT6
Cluster EST : UnigeneHs.130749 [ NCBI ]
CGAP (NCI)Hs.130749
Alternative Splicing GalleryENSG00000167741
Gene ExpressionGGT6 [ NCBI-GEO ]   GGT6 [ EBI - ARRAY_EXPRESS ]   GGT6 [ SEEK ]   GGT6 [ MEM ]
Gene Expression Viewer (FireBrowse)GGT6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)124975
GTEX Portal (Tissue expression)GGT6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P531   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P531  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P531
Splice isoforms : SwissVarQ6P531
Catalytic activity : Enzyme2.3.2.2 [ Enzyme-Expasy ]   2.3.2.22.3.2.2 [ IntEnz-EBI ]   2.3.2.2 [ BRENDA ]   2.3.2.2 [ KEGG ]   
PhosPhoSitePlusQ6P531
Domains : Interpro (EBI)GGT_peptidase    Ntn_hydrolases_N   
Domain families : Pfam (Sanger)G_glu_transpept (PF01019)   
Domain families : Pfam (NCBI)pfam01019   
Conserved Domain (NCBI)GGT6
DMDM Disease mutations124975
Blocks (Seattle)GGT6
SuperfamilyQ6P531
Human Protein AtlasENSG00000167741
Peptide AtlasQ6P531
HPRD08293
IPIIPI00749196   IPI00940353   IPI00440764   
Protein Interaction databases
DIP (DOE-UCLA)Q6P531
IntAct (EBI)Q6P531
FunCoupENSG00000167741
BioGRIDGGT6
STRING (EMBL)GGT6
ZODIACGGT6
Ontologies - Pathways
QuickGOQ6P531
Ontology : AmiGOgamma-glutamyltransferase activity  proteolysis  glutathione metabolic process  glutathione biosynthetic process  integral component of membrane  leukotriene biosynthetic process  anchored component of external side of plasma membrane  glutathione hydrolase activity  extracellular exosome  
Ontology : EGO-EBIgamma-glutamyltransferase activity  proteolysis  glutathione metabolic process  glutathione biosynthetic process  integral component of membrane  leukotriene biosynthetic process  anchored component of external side of plasma membrane  glutathione hydrolase activity  extracellular exosome  
Pathways : KEGGTaurine and hypotaurine metabolism    Cyanoamino acid metabolism    Glutathione metabolism    Arachidonic acid metabolism   
NDEx NetworkGGT6
Atlas of Cancer Signalling NetworkGGT6
Wikipedia pathwaysGGT6
Orthology - Evolution
OrthoDB124975
GeneTree (enSembl)ENSG00000167741
Phylogenetic Trees/Animal Genes : TreeFamGGT6
HOVERGENQ6P531
HOGENOMQ6P531
Homologs : HomoloGeneGGT6
Homology/Alignments : Family Browser (UCSC)GGT6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGGT6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GGT6
dbVarGGT6
ClinVarGGT6
1000_GenomesGGT6 
Exome Variant ServerGGT6
ExAC (Exome Aggregation Consortium)GGT6 (select the gene name)
Genetic variants : HAPMAP124975
Genomic Variants (DGV)GGT6 [DGVbeta]
DECIPHER (Syndromes)17:4460222-4463891  ENSG00000167741
CONAN: Copy Number AnalysisGGT6 
Mutations
ICGC Data PortalGGT6 
TCGA Data PortalGGT6 
Broad Tumor PortalGGT6
OASIS PortalGGT6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGGT6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGGT6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GGT6
DgiDB (Drug Gene Interaction Database)GGT6
DoCM (Curated mutations)GGT6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GGT6 (select a term)
intoGenGGT6
Cancer3DGGT6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612341   
Orphanet
MedgenGGT6
Genetic Testing Registry GGT6
NextProtQ6P531 [Medical]
TSGene124975
GENETestsGGT6
Huge Navigator GGT6 [HugePedia]
snp3D : Map Gene to Disease124975
BioCentury BCIQGGT6
ClinGenGGT6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD124975
Chemical/Pharm GKB GenePA142671739
Clinical trialGGT6
Miscellaneous
canSAR (ICR)GGT6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGGT6
EVEXGGT6
GoPubMedGGT6
iHOPGGT6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 12:06:03 CET 2017

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