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GGTA1P (glycoprotein, alpha-galactosyltransferase 1 pseudogene)

Identity

Alias_namesGLYT2
GGTA
GGTA1
glycoprotein
Other aliasa1/3GTP
HGNC (Hugo) GGTA1P
LocusID (NCBI) 2681
Atlas_Id 40710
Location 9q33.2  [Link to chromosome band 9q33]
Location_base_pair Starts at 121455041 and ends at 121500027 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GGTA1P   4253
Cards
Entrez_Gene (NCBI)GGTA1P  2681  glycoprotein, alpha-galactosyltransferase 1 pseudogene
AliasesGGTA; GGTA1; GLYT2; a1/3GTP
GeneCards (Weizmann)GGTA1P
Ensembl hg19 (Hinxton)ENSG00000204136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204136 [Gene_View]  chr9:121455041-121500027 [Contig_View]  GGTA1P [Vega]
ICGC DataPortalENSG00000204136
TCGA cBioPortalGGTA1P
AceView (NCBI)GGTA1P
Genatlas (Paris)GGTA1P
WikiGenes2681
SOURCE (Princeton)GGTA1P
Genetics Home Reference (NIH)GGTA1P
Genomic and cartography
GoldenPath hg38 (UCSC)GGTA1P  -     chr9:121455041-121500027 -  9q33.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GGTA1P  -     9q33.2   [Description]    (hg19-Feb_2009)
EnsemblGGTA1P - 9q33.2 [CytoView hg19]  GGTA1P - 9q33.2 [CytoView hg38]
Mapping of homologs : NCBIGGTA1P [Mapview hg19]  GGTA1P [Mapview hg38]
OMIM104175   
Gene and transcription
Genbank (Entrez)AF305838 AF378121 AF378122 AF378123 BC045756
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GGTA1P
Cluster EST : UnigeneHs.97469 [ NCBI ]
CGAP (NCI)Hs.97469
Alternative Splicing GalleryENSG00000204136
Gene ExpressionGGTA1P [ NCBI-GEO ]   GGTA1P [ EBI - ARRAY_EXPRESS ]   GGTA1P [ SEEK ]   GGTA1P [ MEM ]
Gene Expression Viewer (FireBrowse)GGTA1P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2681
GTEX Portal (Tissue expression)GGTA1P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G0N0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G0N0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G0N0
Splice isoforms : SwissVarQ4G0N0
PhosPhoSitePlusQ4G0N0
Domains : Interpro (EBI)Glyco_trans_6   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GGTA1P
DMDM Disease mutations2681
Blocks (Seattle)GGTA1P
SuperfamilyQ4G0N0
Human Protein AtlasENSG00000204136
Peptide AtlasQ4G0N0
IPIIPI00641358   
Protein Interaction databases
DIP (DOE-UCLA)Q4G0N0
IntAct (EBI)Q4G0N0
FunCoupENSG00000204136
BioGRIDGGTA1P
STRING (EMBL)GGTA1P
ZODIACGGTA1P
Ontologies - Pathways
QuickGOQ4G0N0
Ontology : AmiGOgamma-glutamyltransferase activity  carbohydrate metabolic process  glutathione metabolic process  integral component of membrane  transferase activity, transferring hexosyl groups  leukotriene biosynthetic process  anchored component of external side of plasma membrane  Golgi cisterna  Golgi cisterna membrane  protein galactosylation at cell surface  
Ontology : EGO-EBIgamma-glutamyltransferase activity  carbohydrate metabolic process  glutathione metabolic process  integral component of membrane  transferase activity, transferring hexosyl groups  leukotriene biosynthetic process  anchored component of external side of plasma membrane  Golgi cisterna  Golgi cisterna membrane  protein galactosylation at cell surface  
NDEx NetworkGGTA1P
Atlas of Cancer Signalling NetworkGGTA1P
Wikipedia pathwaysGGTA1P
Orthology - Evolution
OrthoDB2681
GeneTree (enSembl)ENSG00000204136
Phylogenetic Trees/Animal Genes : TreeFamGGTA1P
HOVERGENQ4G0N0
HOGENOMQ4G0N0
Homologs : HomoloGeneGGTA1P
Homology/Alignments : Family Browser (UCSC)GGTA1P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGGTA1P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GGTA1P
dbVarGGTA1P
ClinVarGGTA1P
1000_GenomesGGTA1P 
Exome Variant ServerGGTA1P
ExAC (Exome Aggregation Consortium)GGTA1P (select the gene name)
Genetic variants : HAPMAP2681
Genomic Variants (DGV)GGTA1P [DGVbeta]
DECIPHERGGTA1P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGGTA1P 
Mutations
ICGC Data PortalGGTA1P 
TCGA Data PortalGGTA1P 
Broad Tumor PortalGGTA1P
OASIS PortalGGTA1P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGGTA1P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GGTA1P
DgiDB (Drug Gene Interaction Database)GGTA1P
DoCM (Curated mutations)GGTA1P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GGTA1P (select a term)
intoGenGGTA1P
Cancer3DGGTA1P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM104175   
Orphanet
MedgenGGTA1P
Genetic Testing Registry GGTA1P
NextProtQ4G0N0 [Medical]
TSGene2681
GENETestsGGTA1P
Target ValidationGGTA1P
Huge Navigator GGTA1P [HugePedia]
snp3D : Map Gene to Disease2681
BioCentury BCIQGGTA1P
ClinGenGGTA1P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2681
Chemical/Pharm GKB GenePA28666
Clinical trialGGTA1P
Miscellaneous
canSAR (ICR)GGTA1P (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGGTA1P
EVEXGGTA1P
GoPubMedGGTA1P
iHOPGGTA1P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:54:14 CEST 2017

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