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GGTLC1 (gamma-glutamyltransferase light chain 1)

Identity

Alias_namesGGTLA4
GGTLA3
gamma-glutamyltransferase-like activity 4
gamma-glutamyltransferase-like activity 3
Alias_symbol (synonym)dJ831C21.2
dJ831C21.1
Other aliasGGTL6
HGNC (Hugo) GGTLC1
LocusID (NCBI) 92086
Atlas_Id 63775
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 23985053 and ends at 23988779 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GGTLC1   16437
Cards
Entrez_Gene (NCBI)GGTLC1  92086  gamma-glutamyltransferase light chain 1
AliasesGGTL6; GGTLA3; GGTLA4; dJ831C21.1; 
dJ831C21.2
GeneCards (Weizmann)GGTLC1
Ensembl hg19 (Hinxton)ENSG00000149435 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149435 [Gene_View]  chr20:23985053-23988779 [Contig_View]  GGTLC1 [Vega]
ICGC DataPortalENSG00000149435
TCGA cBioPortalGGTLC1
AceView (NCBI)GGTLC1
Genatlas (Paris)GGTLC1
WikiGenes92086
SOURCE (Princeton)GGTLC1
Genetics Home Reference (NIH)GGTLC1
Genomic and cartography
GoldenPath hg38 (UCSC)GGTLC1  -     chr20:23985053-23988779 -  20p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GGTLC1  -     20p11.21   [Description]    (hg19-Feb_2009)
EnsemblGGTLC1 - 20p11.21 [CytoView hg19]  GGTLC1 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBIGGTLC1 [Mapview hg19]  GGTLC1 [Mapview hg38]
OMIM612338   
Gene and transcription
Genbank (Entrez)BC040904 HQ448645 L20491 L20492
RefSeq transcript (Entrez)NM_080920 NM_178311 NM_178312
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GGTLC1
Cluster EST : UnigeneHs.355394 [ NCBI ]
CGAP (NCI)Hs.355394
Alternative Splicing GalleryENSG00000149435
Gene ExpressionGGTLC1 [ NCBI-GEO ]   GGTLC1 [ EBI - ARRAY_EXPRESS ]   GGTLC1 [ SEEK ]   GGTLC1 [ MEM ]
Gene Expression Viewer (FireBrowse)GGTLC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92086
GTEX Portal (Tissue expression)GGTLC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BX51   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BX51  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BX51
Splice isoforms : SwissVarQ9BX51
PhosPhoSitePlusQ9BX51
Domaine pattern : Prosite (Expaxy)G_GLU_TRANSPEPTIDASE (PS00462)   
Domains : Interpro (EBI)GGT_peptidase    Ntn_hydrolases_N   
Domain families : Pfam (Sanger)G_glu_transpept (PF01019)   
Domain families : Pfam (NCBI)pfam01019   
Conserved Domain (NCBI)GGTLC1
DMDM Disease mutations92086
Blocks (Seattle)GGTLC1
SuperfamilyQ9BX51
Human Protein AtlasENSG00000149435
Peptide AtlasQ9BX51
HPRD17037
IPIIPI00027976   IPI00940958   
Protein Interaction databases
DIP (DOE-UCLA)Q9BX51
IntAct (EBI)Q9BX51
FunCoupENSG00000149435
BioGRIDGGTLC1
STRING (EMBL)GGTLC1
ZODIACGGTLC1
Ontologies - Pathways
QuickGOQ9BX51
Ontology : AmiGOgamma-glutamyltransferase activity  proteolysis  glutathione metabolic process  glutathione catabolic process  leukotriene biosynthetic process  anchored component of external side of plasma membrane  glutathione hydrolase activity  
Ontology : EGO-EBIgamma-glutamyltransferase activity  proteolysis  glutathione metabolic process  glutathione catabolic process  leukotriene biosynthetic process  anchored component of external side of plasma membrane  glutathione hydrolase activity  
NDEx NetworkGGTLC1
Atlas of Cancer Signalling NetworkGGTLC1
Wikipedia pathwaysGGTLC1
Orthology - Evolution
OrthoDB92086
GeneTree (enSembl)ENSG00000149435
Phylogenetic Trees/Animal Genes : TreeFamGGTLC1
HOVERGENQ9BX51
HOGENOMQ9BX51
Homologs : HomoloGeneGGTLC1
Homology/Alignments : Family Browser (UCSC)GGTLC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGGTLC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GGTLC1
dbVarGGTLC1
ClinVarGGTLC1
1000_GenomesGGTLC1 
Exome Variant ServerGGTLC1
ExAC (Exome Aggregation Consortium)GGTLC1 (select the gene name)
Genetic variants : HAPMAP92086
Genomic Variants (DGV)GGTLC1 [DGVbeta]
DECIPHERGGTLC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGGTLC1 
Mutations
ICGC Data PortalGGTLC1 
TCGA Data PortalGGTLC1 
Broad Tumor PortalGGTLC1
OASIS PortalGGTLC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGGTLC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGGTLC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GGTLC1
DgiDB (Drug Gene Interaction Database)GGTLC1
DoCM (Curated mutations)GGTLC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GGTLC1 (select a term)
intoGenGGTLC1
Cancer3DGGTLC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612338   
Orphanet
MedgenGGTLC1
Genetic Testing Registry GGTLC1
NextProtQ9BX51 [Medical]
TSGene92086
GENETestsGGTLC1
Target ValidationGGTLC1
Huge Navigator GGTLC1 [HugePedia]
snp3D : Map Gene to Disease92086
BioCentury BCIQGGTLC1
ClinGenGGTLC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92086
Chemical/Pharm GKB GenePA28671
Clinical trialGGTLC1
Miscellaneous
canSAR (ICR)GGTLC1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGGTLC1
EVEXGGTLC1
GoPubMedGGTLC1
iHOPGGTLC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 15:50:35 CEST 2017

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