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GHDC (GH3 domain containing)

Identity

Alias_symbol (synonym)LGP1
Other aliasD11LGP1
HGNC (Hugo) GHDC
LocusID (NCBI) 84514
Atlas_Id 41149
Location 17q21.2  [Link to chromosome band 17q21]
Location_base_pair Starts at 42189087 and ends at 42194532 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GHDC   24438
Cards
Entrez_Gene (NCBI)GHDC  84514  GH3 domain containing
AliasesD11LGP1; LGP1
GeneCards (Weizmann)GHDC
Ensembl hg19 (Hinxton)ENSG00000167925 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167925 [Gene_View]  chr17:42189087-42194532 [Contig_View]  GHDC [Vega]
ICGC DataPortalENSG00000167925
TCGA cBioPortalGHDC
AceView (NCBI)GHDC
Genatlas (Paris)GHDC
WikiGenes84514
SOURCE (Princeton)GHDC
Genetics Home Reference (NIH)GHDC
Genomic and cartography
GoldenPath hg38 (UCSC)GHDC  -     chr17:42189087-42194532 -  17q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GHDC  -     17q21.2   [Description]    (hg19-Feb_2009)
EnsemblGHDC - 17q21.2 [CytoView hg19]  GHDC - 17q21.2 [CytoView hg38]
Mapping of homologs : NCBIGHDC [Mapview hg19]  GHDC [Mapview hg38]
OMIM608587   
Gene and transcription
Genbank (Entrez)AF316997 AK074700 AK075277 AK122777 AK123075
RefSeq transcript (Entrez)NM_001142622 NM_001142623 NM_032484
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GHDC
Cluster EST : UnigeneHs.38039 [ NCBI ]
CGAP (NCI)Hs.38039
Alternative Splicing GalleryENSG00000167925
Gene ExpressionGHDC [ NCBI-GEO ]   GHDC [ EBI - ARRAY_EXPRESS ]   GHDC [ SEEK ]   GHDC [ MEM ]
Gene Expression Viewer (FireBrowse)GHDC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84514
GTEX Portal (Tissue expression)GHDC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2G8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2G8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2G8
Splice isoforms : SwissVarQ8N2G8
PhosPhoSitePlusQ8N2G8
Domains : Interpro (EBI)GH3   
Domain families : Pfam (Sanger)GH3 (PF03321)   
Domain families : Pfam (NCBI)pfam03321   
Conserved Domain (NCBI)GHDC
DMDM Disease mutations84514
Blocks (Seattle)GHDC
SuperfamilyQ8N2G8
Human Protein AtlasENSG00000167925
Peptide AtlasQ8N2G8
HPRD16352
IPIIPI00427501   IPI00427502   IPI00746804   IPI01014633   IPI00909449   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2G8
IntAct (EBI)Q8N2G8
FunCoupENSG00000167925
BioGRIDGHDC
STRING (EMBL)GHDC
ZODIACGHDC
Ontologies - Pathways
QuickGOQ8N2G8
Ontology : AmiGOmolecular_function  extracellular region  nuclear envelope  endoplasmic reticulum  biological_process  membrane  secretory granule lumen  specific granule lumen  neutrophil degranulation  
Ontology : EGO-EBImolecular_function  extracellular region  nuclear envelope  endoplasmic reticulum  biological_process  membrane  secretory granule lumen  specific granule lumen  neutrophil degranulation  
NDEx NetworkGHDC
Atlas of Cancer Signalling NetworkGHDC
Wikipedia pathwaysGHDC
Orthology - Evolution
OrthoDB84514
GeneTree (enSembl)ENSG00000167925
Phylogenetic Trees/Animal Genes : TreeFamGHDC
HOVERGENQ8N2G8
HOGENOMQ8N2G8
Homologs : HomoloGeneGHDC
Homology/Alignments : Family Browser (UCSC)GHDC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGHDC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GHDC
dbVarGHDC
ClinVarGHDC
1000_GenomesGHDC 
Exome Variant ServerGHDC
ExAC (Exome Aggregation Consortium)GHDC (select the gene name)
Genetic variants : HAPMAP84514
Genomic Variants (DGV)GHDC [DGVbeta]
DECIPHERGHDC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGHDC 
Mutations
ICGC Data PortalGHDC 
TCGA Data PortalGHDC 
Broad Tumor PortalGHDC
OASIS PortalGHDC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGHDC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGHDC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GHDC
DgiDB (Drug Gene Interaction Database)GHDC
DoCM (Curated mutations)GHDC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GHDC (select a term)
intoGenGHDC
Cancer3DGHDC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608587   
Orphanet
MedgenGHDC
Genetic Testing Registry GHDC
NextProtQ8N2G8 [Medical]
TSGene84514
GENETestsGHDC
Target ValidationGHDC
Huge Navigator GHDC [HugePedia]
snp3D : Map Gene to Disease84514
BioCentury BCIQGHDC
ClinGenGHDC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84514
Chemical/Pharm GKB GenePA147358034
Clinical trialGHDC
Miscellaneous
canSAR (ICR)GHDC (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGHDC
EVEXGHDC
GoPubMedGHDC
iHOPGHDC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:35:10 CEST 2017

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