Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GHET1 (gastric carcinoma proliferation enhancing transcript 1)

Identity

Alias_symbol (synonym)lncRNA-GHET1
Other alias
HGNC (Hugo) GHET1
LocusID (NCBI) 102723099
Atlas_Id 53791
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 148987527 and ends at 148989424 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GHET1   49425
Cards
Entrez_Gene (NCBI)GHET1  102723099  gastric carcinoma proliferation enhancing transcript 1
AliaseslncRNA-GHET1
GeneCards (Weizmann)GHET1
Ensembl hg19 (Hinxton)ENSG00000281189 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000281189 [Gene_View]  ENSG00000281189 [Sequence]  chr7:148987527-148989424 [Contig_View]  GHET1 [Vega]
ICGC DataPortalENSG00000281189
TCGA cBioPortalGHET1
AceView (NCBI)GHET1
Genatlas (Paris)GHET1
WikiGenes102723099
SOURCE (Princeton)GHET1
Genetics Home Reference (NIH)GHET1
Genomic and cartography
GoldenPath hg38 (UCSC)GHET1  -     chr7:148987527-148989424 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GHET1  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblGHET1 - 7q36.1 [CytoView hg19]  GHET1 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIGHET1 [Mapview hg19]  GHET1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123072 BC037977 DA076268
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GHET1
Cluster EST : UnigeneHs.737789 [ NCBI ]
CGAP (NCI)Hs.737789
Alternative Splicing GalleryENSG00000281189
Gene ExpressionGHET1 [ NCBI-GEO ]   GHET1 [ EBI - ARRAY_EXPRESS ]   GHET1 [ SEEK ]   GHET1 [ MEM ]
Gene Expression Viewer (FireBrowse)GHET1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102723099
GTEX Portal (Tissue expression)GHET1
Human Protein AtlasENSG00000281189-GHET1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GHET1
DMDM Disease mutations102723099
Blocks (Seattle)GHET1
Human Protein Atlas [tissue]ENSG00000281189-GHET1 [tissue]
Protein Interaction databases
FunCoupENSG00000281189
BioGRIDGHET1
STRING (EMBL)GHET1
ZODIACGHET1
Ontologies - Pathways
Huge Navigator GHET1 [HugePedia]
snp3D : Map Gene to Disease102723099
BioCentury BCIQGHET1
ClinGenGHET1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102723099
Clinical trialGHET1
Miscellaneous
canSAR (ICR)GHET1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGHET1
EVEXGHET1
GoPubMedGHET1
iHOPGHET1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 11:08:22 CET 2018

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