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GHITM (growth hormone inducible transmembrane protein)

Identity

Alias (NCBI)DERP2
HSPC282
MICS1
My021
PTD010
TMBIM5
HGNC (Hugo) GHITM
HGNC Alias symbHSPC282
PTD010
DERP2
My021
TMBIM5
HGNC Alias nametransmembrane BAX inhibitor motif containing 5
LocusID (NCBI) 27069
Atlas_Id 50306
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84139509 and ends at 84153568 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FOXP1 (3p13) / GHITM (10q23.1)GHITM (10q23.1) / GHITM (10q23.1)GHITM (10q23.1) / MUC5B (11p15.5)
JPX (Xq13.2) / GHITM (10q23.1)PNPLA2 (11p15.5) / GHITM (10q23.1)SNHG1 (11q12.3) / GHITM (10q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GHITM   17281
Cards
Entrez_Gene (NCBI)GHITM    growth hormone inducible transmembrane protein
AliasesDERP2; HSPC282; MICS1; My021; 
PTD010; TMBIM5
GeneCards (Weizmann)GHITM
Ensembl hg19 (Hinxton)ENSG00000165678 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165678 [Gene_View]  ENSG00000165678 [Sequence]  chr10:84139509-84153568 [Contig_View]  GHITM [Vega]
ICGC DataPortalENSG00000165678
TCGA cBioPortalGHITM
AceView (NCBI)GHITM
Genatlas (Paris)GHITM
SOURCE (Princeton)GHITM
Genetics Home Reference (NIH)GHITM
Genomic and cartography
GoldenPath hg38 (UCSC)GHITM  -     chr10:84139509-84153568 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GHITM  -     10q23.1   [Description]    (hg19-Feb_2009)
GoldenPathGHITM - 10q23.1 [CytoView hg19]  GHITM - 10q23.1 [CytoView hg38]
ImmunoBaseENSG00000165678
Genome Data Viewer NCBIGHITM [Mapview hg19]  
OMIM619205   
Gene and transcription
Genbank (Entrez)AB009685 AF060923 AF078863 AF131820 AF161400
RefSeq transcript (Entrez)NM_014394
Consensus coding sequences : CCDS (NCBI)GHITM
Gene ExpressionGHITM [ NCBI-GEO ]   GHITM [ EBI - ARRAY_EXPRESS ]   GHITM [ SEEK ]   GHITM [ MEM ]
Gene Expression Viewer (FireBrowse)GHITM [ Firebrowse - Broad ]
GenevisibleExpression of GHITM in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27069
GTEX Portal (Tissue expression)GHITM
Human Protein AtlasENSG00000165678-GHITM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3K2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3K2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3K2
PhosPhoSitePlusQ9H3K2
Domains : Interpro (EBI)Bax_inhibitor_1-related    GHITM   
Domain families : Pfam (Sanger)Bax1-I (PF01027)   
Domain families : Pfam (NCBI)pfam01027   
Conserved Domain (NCBI)GHITM
SuperfamilyQ9H3K2
AlphaFold pdb e-kbQ9H3K2   
Human Protein Atlas [tissue]ENSG00000165678-GHITM [tissue]
HPRD17038
Protein Interaction databases
DIP (DOE-UCLA)Q9H3K2
IntAct (EBI)Q9H3K2
BioGRIDGHITM
STRING (EMBL)GHITM
ZODIACGHITM
Ontologies - Pathways
QuickGOQ9H3K2
Ontology : AmiGOmolecular_function  protein binding  mitochondrion  apoptotic process  inner mitochondrial membrane organization  integral component of mitochondrial inner membrane  extracellular exosome  negative regulation of release of cytochrome c from mitochondria  positive regulation of mitochondrial ATP synthesis coupled electron transport  
Ontology : EGO-EBImolecular_function  protein binding  mitochondrion  apoptotic process  inner mitochondrial membrane organization  integral component of mitochondrial inner membrane  extracellular exosome  negative regulation of release of cytochrome c from mitochondria  positive regulation of mitochondrial ATP synthesis coupled electron transport  
NDEx NetworkGHITM
Atlas of Cancer Signalling NetworkGHITM
Wikipedia pathwaysGHITM
Orthology - Evolution
OrthoDB27069
GeneTree (enSembl)ENSG00000165678
Phylogenetic Trees/Animal Genes : TreeFamGHITM
Homologs : HomoloGeneGHITM
Homology/Alignments : Family Browser (UCSC)GHITM
Gene fusions - Rearrangements
Fusion : QuiverGHITM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGHITM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GHITM
dbVarGHITM
ClinVarGHITM
MonarchGHITM
1000_GenomesGHITM 
Exome Variant ServerGHITM
GNOMAD BrowserENSG00000165678
Varsome BrowserGHITM
ACMGGHITM variants
VarityQ9H3K2
Genomic Variants (DGV)GHITM [DGVbeta]
DECIPHERGHITM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGHITM 
Mutations
ICGC Data PortalGHITM 
TCGA Data PortalGHITM 
Broad Tumor PortalGHITM
OASIS PortalGHITM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGHITM  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGHITM
Mutations and Diseases : HGMDGHITM
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGHITM
DgiDB (Drug Gene Interaction Database)GHITM
DoCM (Curated mutations)GHITM
CIViC (Clinical Interpretations of Variants in Cancer)GHITM
Cancer3DGHITM
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM619205   
Orphanet
DisGeNETGHITM
MedgenGHITM
Genetic Testing Registry GHITM
NextProtQ9H3K2 [Medical]
GENETestsGHITM
Target ValidationGHITM
Huge Navigator GHITM [HugePedia]
ClinGenGHITM
Clinical trials, drugs, therapy
MyCancerGenomeGHITM
Protein Interactions : CTDGHITM
Pharm GKB GenePA28673
PharosQ9H3K2
Clinical trialGHITM
Miscellaneous
canSAR (ICR)GHITM
HarmonizomeGHITM
DataMed IndexGHITM
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGHITM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:10:43 CEST 2021

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