Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GHITM (growth hormone inducible transmembrane protein)

Identity

Alias_symbol (synonym)HSPC282
PTD010
DERP2
My021
TMBIM5
Other aliasMICS1
HGNC (Hugo) GHITM
LocusID (NCBI) 27069
Atlas_Id 50306
Location 10q23.1  [Link to chromosome band 10q23]
Location_base_pair Starts at 84139429 and ends at 84153555 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FOXP1 (3p13) / GHITM (10q23.1)GHITM (10q23.1) / GHITM (10q23.1)GHITM (10q23.1) / MUC5B (11p15.5)
JPX (Xq13.2) / GHITM (10q23.1)PNPLA2 (11p15.5) / GHITM (10q23.1)SNHG1 (11q12.3) / GHITM (10q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GHITM   17281
Cards
Entrez_Gene (NCBI)GHITM  27069  growth hormone inducible transmembrane protein
AliasesDERP2; HSPC282; MICS1; My021; 
PTD010; TMBIM5
GeneCards (Weizmann)GHITM
Ensembl hg19 (Hinxton)ENSG00000165678 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165678 [Gene_View]  chr10:84139429-84153555 [Contig_View]  GHITM [Vega]
ICGC DataPortalENSG00000165678
TCGA cBioPortalGHITM
AceView (NCBI)GHITM
Genatlas (Paris)GHITM
WikiGenes27069
SOURCE (Princeton)GHITM
Genetics Home Reference (NIH)GHITM
Genomic and cartography
GoldenPath hg38 (UCSC)GHITM  -     chr10:84139429-84153555 +  10q23.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GHITM  -     10q23.1   [Description]    (hg19-Feb_2009)
EnsemblGHITM - 10q23.1 [CytoView hg19]  GHITM - 10q23.1 [CytoView hg38]
Mapping of homologs : NCBIGHITM [Mapview hg19]  GHITM [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB009685 AF060923 AF078863 AF131820 AF161400
RefSeq transcript (Entrez)NM_014394
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GHITM
Cluster EST : UnigeneHs.352656 [ NCBI ]
CGAP (NCI)Hs.352656
Alternative Splicing GalleryENSG00000165678
Gene ExpressionGHITM [ NCBI-GEO ]   GHITM [ EBI - ARRAY_EXPRESS ]   GHITM [ SEEK ]   GHITM [ MEM ]
Gene Expression Viewer (FireBrowse)GHITM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27069
GTEX Portal (Tissue expression)GHITM
Human Protein AtlasENSG00000165678-GHITM [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3K2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3K2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3K2
Splice isoforms : SwissVarQ9H3K2
PhosPhoSitePlusQ9H3K2
Domains : Interpro (EBI)Bax_inhibitor_1-related   
Domain families : Pfam (Sanger)Bax1-I (PF01027)   
Domain families : Pfam (NCBI)pfam01027   
Conserved Domain (NCBI)GHITM
DMDM Disease mutations27069
Blocks (Seattle)GHITM
SuperfamilyQ9H3K2
Human Protein Atlas [tissue]ENSG00000165678-GHITM [tissue]
Peptide AtlasQ9H3K2
HPRD17038
IPIIPI00909387   IPI01010176   IPI00941155   IPI00549970   
Protein Interaction databases
DIP (DOE-UCLA)Q9H3K2
IntAct (EBI)Q9H3K2
FunCoupENSG00000165678
BioGRIDGHITM
STRING (EMBL)GHITM
ZODIACGHITM
Ontologies - Pathways
QuickGOQ9H3K2
Ontology : AmiGOmolecular_function  protein binding  mitochondrion  mitochondrial inner membrane  apoptotic process  biological_process  integral component of membrane  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  mitochondrion  mitochondrial inner membrane  apoptotic process  biological_process  integral component of membrane  extracellular exosome  
NDEx NetworkGHITM
Atlas of Cancer Signalling NetworkGHITM
Wikipedia pathwaysGHITM
Orthology - Evolution
OrthoDB27069
GeneTree (enSembl)ENSG00000165678
Phylogenetic Trees/Animal Genes : TreeFamGHITM
HOVERGENQ9H3K2
HOGENOMQ9H3K2
Homologs : HomoloGeneGHITM
Homology/Alignments : Family Browser (UCSC)GHITM
Gene fusions - Rearrangements
Fusion: Tumor Portal GHITM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGHITM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GHITM
dbVarGHITM
ClinVarGHITM
1000_GenomesGHITM 
Exome Variant ServerGHITM
ExAC (Exome Aggregation Consortium)ENSG00000165678
GNOMAD BrowserENSG00000165678
Genetic variants : HAPMAP27069
Genomic Variants (DGV)GHITM [DGVbeta]
DECIPHERGHITM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGHITM 
Mutations
ICGC Data PortalGHITM 
TCGA Data PortalGHITM 
Broad Tumor PortalGHITM
OASIS PortalGHITM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGHITM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGHITM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch GHITM
DgiDB (Drug Gene Interaction Database)GHITM
DoCM (Curated mutations)GHITM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GHITM (select a term)
intoGenGHITM
Cancer3DGHITM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGHITM
Genetic Testing Registry GHITM
NextProtQ9H3K2 [Medical]
TSGene27069
GENETestsGHITM
Target ValidationGHITM
Huge Navigator GHITM [HugePedia]
snp3D : Map Gene to Disease27069
BioCentury BCIQGHITM
ClinGenGHITM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27069
Chemical/Pharm GKB GenePA28673
Clinical trialGHITM
Miscellaneous
canSAR (ICR)GHITM (select the gene name)
Probes
Litterature
PubMed26 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGHITM
EVEXGHITM
GoPubMedGHITM
iHOPGHITM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:51:14 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.