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GHSR (growth hormone secretagogue receptor)

Identity

Other aliasGHDP
HGNC (Hugo) GHSR
LocusID (NCBI) 2693
Atlas_Id 46445
Location 3q26.31  [Link to chromosome band 3q26]
Location_base_pair Starts at 172447543 and ends at 172448456 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GHSR   4267
Cards
Entrez_Gene (NCBI)GHSR  2693  growth hormone secretagogue receptor
AliasesGHDP
GeneCards (Weizmann)GHSR
Ensembl hg19 (Hinxton)ENSG00000121853 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000121853 [Gene_View]  chr3:172447543-172448456 [Contig_View]  GHSR [Vega]
ICGC DataPortalENSG00000121853
TCGA cBioPortalGHSR
AceView (NCBI)GHSR
Genatlas (Paris)GHSR
WikiGenes2693
SOURCE (Princeton)GHSR
Genetics Home Reference (NIH)GHSR
Genomic and cartography
GoldenPath hg38 (UCSC)GHSR  -     chr3:172447543-172448456 -  3q26.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GHSR  -     3q26.31   [Description]    (hg19-Feb_2009)
EnsemblGHSR - 3q26.31 [CytoView hg19]  GHSR - 3q26.31 [CytoView hg38]
Mapping of homologs : NCBIGHSR [Mapview hg19]  GHSR [Mapview hg38]
OMIM601898   
Gene and transcription
Genbank (Entrez)AY429112 BC069068 BC069374 BC113547 HQ258211
RefSeq transcript (Entrez)NM_004122 NM_198407
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GHSR
Cluster EST : UnigeneHs.130212 [ NCBI ]
CGAP (NCI)Hs.130212
Alternative Splicing GalleryENSG00000121853
Gene ExpressionGHSR [ NCBI-GEO ]   GHSR [ EBI - ARRAY_EXPRESS ]   GHSR [ SEEK ]   GHSR [ MEM ]
Gene Expression Viewer (FireBrowse)GHSR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2693
GTEX Portal (Tissue expression)GHSR
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92847   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92847  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92847
Splice isoforms : SwissVarQ92847
PhosPhoSitePlusQ92847
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_1 (PS00237)    G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GHS-R    GPCR_Rhodpsn    GPCR_Rhodpsn_7TM   
Domain families : Pfam (Sanger)7tm_1 (PF00001)   
Domain families : Pfam (NCBI)pfam00001   
Conserved Domain (NCBI)GHSR
DMDM Disease mutations2693
Blocks (Seattle)GHSR
SuperfamilyQ92847
Human Protein AtlasENSG00000121853
Peptide AtlasQ92847
HPRD03541
IPIIPI00023793   IPI00219687   
Protein Interaction databases
DIP (DOE-UCLA)Q92847
IntAct (EBI)Q92847
FunCoupENSG00000121853
BioGRIDGHSR
STRING (EMBL)GHSR
ZODIACGHSR
Ontologies - Pathways
QuickGOQ92847
Ontology : AmiGOgrowth hormone secretagogue receptor activity  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  actin polymerization or depolymerization  adult feeding behavior  response to hormone  hormone-mediated signaling pathway  cell surface  integral component of membrane  growth hormone-releasing hormone receptor activity  peptide hormone binding  growth hormone secretion  response to food  positive regulation of appetite  negative regulation of interleukin-1 beta production  cellular response to insulin stimulus  positive regulation of multicellular organism growth  negative regulation of tumor necrosis factor biosynthetic process  neuron projection  regulation of hindgut contraction  positive regulation of insulin-like growth factor receptor signaling pathway  membrane raft  negative regulation of interleukin-6 biosynthetic process  positive regulation of fatty acid metabolic process  negative regulation of insulin secretion  decidualization  negative regulation of inflammatory response  regulation of synapse assembly  
Ontology : EGO-EBIgrowth hormone secretagogue receptor activity  G-protein coupled receptor activity  plasma membrane  G-protein coupled receptor signaling pathway  actin polymerization or depolymerization  adult feeding behavior  response to hormone  hormone-mediated signaling pathway  cell surface  integral component of membrane  growth hormone-releasing hormone receptor activity  peptide hormone binding  growth hormone secretion  response to food  positive regulation of appetite  negative regulation of interleukin-1 beta production  cellular response to insulin stimulus  positive regulation of multicellular organism growth  negative regulation of tumor necrosis factor biosynthetic process  neuron projection  regulation of hindgut contraction  positive regulation of insulin-like growth factor receptor signaling pathway  membrane raft  negative regulation of interleukin-6 biosynthetic process  positive regulation of fatty acid metabolic process  negative regulation of insulin secretion  decidualization  negative regulation of inflammatory response  regulation of synapse assembly  
Pathways : KEGGNeuroactive ligand-receptor interaction   
NDEx NetworkGHSR
Atlas of Cancer Signalling NetworkGHSR
Wikipedia pathwaysGHSR
Orthology - Evolution
OrthoDB2693
GeneTree (enSembl)ENSG00000121853
Phylogenetic Trees/Animal Genes : TreeFamGHSR
HOVERGENQ92847
HOGENOMQ92847
Homologs : HomoloGeneGHSR
Homology/Alignments : Family Browser (UCSC)GHSR
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGHSR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GHSR
dbVarGHSR
ClinVarGHSR
1000_GenomesGHSR 
Exome Variant ServerGHSR
ExAC (Exome Aggregation Consortium)GHSR (select the gene name)
Genetic variants : HAPMAP2693
Genomic Variants (DGV)GHSR [DGVbeta]
DECIPHERGHSR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGHSR 
Mutations
ICGC Data PortalGHSR 
TCGA Data PortalGHSR 
Broad Tumor PortalGHSR
OASIS PortalGHSR [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGHSR  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGHSR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GHSR
DgiDB (Drug Gene Interaction Database)GHSR
DoCM (Curated mutations)GHSR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GHSR (select a term)
intoGenGHSR
Cancer3DGHSR(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601898   
Orphanet21533   
MedgenGHSR
Genetic Testing Registry GHSR
NextProtQ92847 [Medical]
TSGene2693
GENETestsGHSR
Huge Navigator GHSR [HugePedia]
snp3D : Map Gene to Disease2693
BioCentury BCIQGHSR
ClinGenGHSR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2693
Chemical/Pharm GKB GenePA28677
Clinical trialGHSR
Miscellaneous
canSAR (ICR)GHSR (select the gene name)
Probes
Litterature
PubMed131 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGHSR
EVEXGHSR
GoPubMedGHSR
iHOPGHSR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:17:13 CEST 2017

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