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GID4 (GID complex subunit 4 homolog)

Identity

Alias_namesC17orf39
chromosome 17 open reading frame 39
GID complex subunit 4, VID24 homolog (S. cerevisiae)
GID complex subunit 4
Alias_symbol (synonym)VID24
Other alias
HGNC (Hugo) GID4
LocusID (NCBI) 79018
Atlas_Id 63778
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 18039297 and ends at 18068404 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TP53 (17p13.1) / GID4 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GID4   28453
Cards
Entrez_Gene (NCBI)GID4  79018  GID complex subunit 4 homolog
AliasesC17orf39; VID24
GeneCards (Weizmann)GID4
Ensembl hg19 (Hinxton)ENSG00000141034 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141034 [Gene_View]  chr17:18039297-18068404 [Contig_View]  GID4 [Vega]
ICGC DataPortalENSG00000141034
TCGA cBioPortalGID4
AceView (NCBI)GID4
Genatlas (Paris)GID4
WikiGenes79018
SOURCE (Princeton)GID4
Genetics Home Reference (NIH)GID4
Genomic and cartography
GoldenPath hg38 (UCSC)GID4  -     chr17:18039297-18068404 +  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GID4  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblGID4 - 17p11.2 [CytoView hg19]  GID4 - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBIGID4 [Mapview hg19]  GID4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074284 AK124377 AK127580 AK315083 BC000636
RefSeq transcript (Entrez)NM_024052
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GID4
Cluster EST : UnigeneHs.187422 [ NCBI ]
CGAP (NCI)Hs.187422
Alternative Splicing GalleryENSG00000141034
Gene ExpressionGID4 [ NCBI-GEO ]   GID4 [ EBI - ARRAY_EXPRESS ]   GID4 [ SEEK ]   GID4 [ MEM ]
Gene Expression Viewer (FireBrowse)GID4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79018
GTEX Portal (Tissue expression)GID4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVV7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVV7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVV7
Splice isoforms : SwissVarQ8IVV7
PhosPhoSitePlusQ8IVV7
Domains : Interpro (EBI)Vacuolar_import/degrad_Vid24   
Domain families : Pfam (Sanger)Vac_ImportDeg (PF09783)   
Domain families : Pfam (NCBI)pfam09783   
Conserved Domain (NCBI)GID4
DMDM Disease mutations79018
Blocks (Seattle)GID4
SuperfamilyQ8IVV7
Human Protein AtlasENSG00000141034
Peptide AtlasQ8IVV7
HPRD12683
IPIIPI00217151   IPI00793046   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVV7
IntAct (EBI)Q8IVV7
FunCoupENSG00000141034
BioGRIDGID4
STRING (EMBL)GID4
ZODIACGID4
Ontologies - Pathways
QuickGOQ8IVV7
Ontology : AmiGOprotein ubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
Ontology : EGO-EBIprotein ubiquitination  proteasome-mediated ubiquitin-dependent protein catabolic process  ubiquitin protein ligase activity  
NDEx NetworkGID4
Atlas of Cancer Signalling NetworkGID4
Wikipedia pathwaysGID4
Orthology - Evolution
OrthoDB79018
GeneTree (enSembl)ENSG00000141034
Phylogenetic Trees/Animal Genes : TreeFamGID4
HOVERGENQ8IVV7
HOGENOMQ8IVV7
Homologs : HomoloGeneGID4
Homology/Alignments : Family Browser (UCSC)GID4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGID4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GID4
dbVarGID4
ClinVarGID4
1000_GenomesGID4 
Exome Variant ServerGID4
ExAC (Exome Aggregation Consortium)GID4 (select the gene name)
Genetic variants : HAPMAP79018
Genomic Variants (DGV)GID4 [DGVbeta]
DECIPHERGID4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGID4 
Mutations
ICGC Data PortalGID4 
TCGA Data PortalGID4 
Broad Tumor PortalGID4
OASIS PortalGID4 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGID4
BioMutasearch GID4
DgiDB (Drug Gene Interaction Database)GID4
DoCM (Curated mutations)GID4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GID4 (select a term)
intoGenGID4
Cancer3DGID4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGID4
Genetic Testing Registry GID4
NextProtQ8IVV7 [Medical]
TSGene79018
GENETestsGID4
Target ValidationGID4
Huge Navigator GID4 [HugePedia]
snp3D : Map Gene to Disease79018
BioCentury BCIQGID4
ClinGenGID4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79018
Chemical/Pharm GKB GenePA134994398
Clinical trialGID4
Miscellaneous
canSAR (ICR)GID4 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGID4
EVEXGID4
GoPubMedGID4
iHOPGID4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:22 CEST 2017

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