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GID8 (GID complex subunit 8)

Identity

Alias_namesC20orf11
chromosome 20 open reading frame 11
GID complex subunit 8 homolog (S. cerevisiae)
GID complex subunit 8
Alias_symbol (synonym)FLJ20602
bA305P22.1
TWA1
Other alias
HGNC (Hugo) GID8
LocusID (NCBI) 54994
Atlas_Id 63779
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 61569441 and ends at 61579827 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GID8   15857
Cards
Entrez_Gene (NCBI)GID8  54994  GID complex subunit 8
AliasesC20orf11; TWA1
GeneCards (Weizmann)GID8
Ensembl hg19 (Hinxton)ENSG00000101193 [Gene_View]  chr20:61569441-61579827 [Contig_View]  GID8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101193 [Gene_View]  chr20:61569441-61579827 [Contig_View]  GID8 [Vega]
ICGC DataPortalENSG00000101193
TCGA cBioPortalGID8
AceView (NCBI)GID8
Genatlas (Paris)GID8
WikiGenes54994
SOURCE (Princeton)GID8
Genetics Home Reference (NIH)GID8
Genomic and cartography
GoldenPath hg19 (UCSC)GID8  -     chr20:61569441-61579827 +  20q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GID8  -     20q13.33   [Description]    (hg38-Dec_2013)
EnsemblGID8 - 20q13.33 [CytoView hg19]  GID8 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIGID8 [Mapview hg19]  GID8 [Mapview hg38]
OMIM611625   
Gene and transcription
Genbank (Entrez)AK000609 AK025775 AK299509 BC031819 BC032120
RefSeq transcript (Entrez)NM_017896
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011362 NW_004929419
Consensus coding sequences : CCDS (NCBI)GID8
Cluster EST : UnigeneHs.353013 [ NCBI ]
CGAP (NCI)Hs.353013
Alternative Splicing GalleryENSG00000101193
Gene ExpressionGID8 [ NCBI-GEO ]   GID8 [ EBI - ARRAY_EXPRESS ]   GID8 [ SEEK ]   GID8 [ MEM ]
Gene Expression Viewer (FireBrowse)GID8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54994
GTEX Portal (Tissue expression)GID8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWU2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWU2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWU2
Splice isoforms : SwissVarQ9NWU2
PhosPhoSitePlusQ9NWU2
Domaine pattern : Prosite (Expaxy)CTLH (PS50897)    LISH (PS50896)   
Domains : Interpro (EBI)CRA_dom    CTLH/CRA    CTLH_C    LisH   
Domain families : Pfam (Sanger)CLTH (PF10607)    LisH (PF08513)   
Domain families : Pfam (NCBI)pfam10607    pfam08513   
Domain families : Smart (EMBL)CRA (SM00757)  CTLH (SM00668)  LisH (SM00667)  
Conserved Domain (NCBI)GID8
DMDM Disease mutations54994
Blocks (Seattle)GID8
SuperfamilyQ9NWU2
Human Protein AtlasENSG00000101193
Peptide AtlasQ9NWU2
HPRD12738
IPIIPI00016634   IPI00909074   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWU2
IntAct (EBI)Q9NWU2
FunCoupENSG00000101193
BioGRIDGID8
STRING (EMBL)GID8
ZODIACGID8
Ontologies - Pathways
QuickGOQ9NWU2
Ontology : AmiGOnucleoplasm  cell junction  
Ontology : EGO-EBInucleoplasm  cell junction  
NDEx NetworkGID8
Atlas of Cancer Signalling NetworkGID8
Wikipedia pathwaysGID8
Orthology - Evolution
OrthoDB54994
GeneTree (enSembl)ENSG00000101193
Phylogenetic Trees/Animal Genes : TreeFamGID8
HOVERGENQ9NWU2
HOGENOMQ9NWU2
Homologs : HomoloGeneGID8
Homology/Alignments : Family Browser (UCSC)GID8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGID8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GID8
dbVarGID8
ClinVarGID8
1000_GenomesGID8 
Exome Variant ServerGID8
ExAC (Exome Aggregation Consortium)GID8 (select the gene name)
Genetic variants : HAPMAP54994
Genomic Variants (DGV)GID8 [DGVbeta]
DECIPHER (Syndromes)20:61569441-61579827  ENSG00000101193
CONAN: Copy Number AnalysisGID8 
Mutations
ICGC Data PortalGID8 
TCGA Data PortalGID8 
Broad Tumor PortalGID8
OASIS PortalGID8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGID8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GID8
DgiDB (Drug Gene Interaction Database)GID8
DoCM (Curated mutations)GID8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GID8 (select a term)
intoGenGID8
Cancer3DGID8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611625   
Orphanet
MedgenGID8
Genetic Testing Registry GID8
NextProtQ9NWU2 [Medical]
TSGene54994
GENETestsGID8
Huge Navigator GID8 [HugePedia]
snp3D : Map Gene to Disease54994
BioCentury BCIQGID8
ClinGenGID8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54994
Chemical/Pharm GKB GenePA25649
Clinical trialGID8
Miscellaneous
canSAR (ICR)GID8 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGID8
EVEXGID8
GoPubMedGID8
iHOPGID8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:05 CET 2017

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