Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GIGYF1 (GRB10 interacting GYF protein 1)

Identity

Alias_namesPERQ1
PERQ amino acid rich, with GYF domain 1
Alias_symbol (synonym)GYF1
Other alias
HGNC (Hugo) GIGYF1
LocusID (NCBI) 64599
Atlas_Id 63780
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 100679506 and ends at 100689448 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GIGYF1 (7q22.1) / GIGYF1 (7q22.1)GIGYF1 (7q22.1) / GZMB (14q12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GIGYF1   9126
Cards
Entrez_Gene (NCBI)GIGYF1  64599  GRB10 interacting GYF protein 1
AliasesGYF1; PERQ1
GeneCards (Weizmann)GIGYF1
Ensembl hg19 (Hinxton)ENSG00000146830 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146830 [Gene_View]  chr7:100679506-100689448 [Contig_View]  GIGYF1 [Vega]
ICGC DataPortalENSG00000146830
TCGA cBioPortalGIGYF1
AceView (NCBI)GIGYF1
Genatlas (Paris)GIGYF1
WikiGenes64599
SOURCE (Princeton)GIGYF1
Genetics Home Reference (NIH)GIGYF1
Genomic and cartography
GoldenPath hg38 (UCSC)GIGYF1  -     chr7:100679506-100689448 -  7q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GIGYF1  -     7q22.1   [Description]    (hg19-Feb_2009)
EnsemblGIGYF1 - 7q22.1 [CytoView hg19]  GIGYF1 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIGIGYF1 [Mapview hg19]  GIGYF1 [Mapview hg38]
OMIM612064   
Gene and transcription
Genbank (Entrez)AF086157 AF088067 AF289554 AW207128 AY176044
RefSeq transcript (Entrez)NM_022574
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GIGYF1
Cluster EST : UnigeneHs.414396 [ NCBI ]
CGAP (NCI)Hs.414396
Alternative Splicing GalleryENSG00000146830
Gene ExpressionGIGYF1 [ NCBI-GEO ]   GIGYF1 [ EBI - ARRAY_EXPRESS ]   GIGYF1 [ SEEK ]   GIGYF1 [ MEM ]
Gene Expression Viewer (FireBrowse)GIGYF1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64599
GTEX Portal (Tissue expression)GIGYF1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75420   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75420  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75420
Splice isoforms : SwissVarO75420
PhosPhoSitePlusO75420
Domaine pattern : Prosite (Expaxy)GYF (PS50829)   
Domains : Interpro (EBI)GYF   
Domain families : Pfam (Sanger)GYF (PF02213)   
Domain families : Pfam (NCBI)pfam02213   
Domain families : Smart (EMBL)GYF (SM00444)  
Conserved Domain (NCBI)GIGYF1
DMDM Disease mutations64599
Blocks (Seattle)GIGYF1
SuperfamilyO75420
Human Protein AtlasENSG00000146830
Peptide AtlasO75420
HPRD10145
IPIIPI00021739   IPI01010484   
Protein Interaction databases
DIP (DOE-UCLA)O75420
IntAct (EBI)O75420
FunCoupENSG00000146830
BioGRIDGIGYF1
STRING (EMBL)GIGYF1
ZODIACGIGYF1
Ontologies - Pathways
QuickGOO75420
Ontology : AmiGOinsulin-like growth factor receptor signaling pathway  
Ontology : EGO-EBIinsulin-like growth factor receptor signaling pathway  
NDEx NetworkGIGYF1
Atlas of Cancer Signalling NetworkGIGYF1
Wikipedia pathwaysGIGYF1
Orthology - Evolution
OrthoDB64599
GeneTree (enSembl)ENSG00000146830
Phylogenetic Trees/Animal Genes : TreeFamGIGYF1
HOVERGENO75420
HOGENOMO75420
Homologs : HomoloGeneGIGYF1
Homology/Alignments : Family Browser (UCSC)GIGYF1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGIGYF1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GIGYF1
dbVarGIGYF1
ClinVarGIGYF1
1000_GenomesGIGYF1 
Exome Variant ServerGIGYF1
ExAC (Exome Aggregation Consortium)GIGYF1 (select the gene name)
Genetic variants : HAPMAP64599
Genomic Variants (DGV)GIGYF1 [DGVbeta]
DECIPHERGIGYF1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGIGYF1 
Mutations
ICGC Data PortalGIGYF1 
TCGA Data PortalGIGYF1 
Broad Tumor PortalGIGYF1
OASIS PortalGIGYF1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGIGYF1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGIGYF1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GIGYF1
DgiDB (Drug Gene Interaction Database)GIGYF1
DoCM (Curated mutations)GIGYF1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GIGYF1 (select a term)
intoGenGIGYF1
Cancer3DGIGYF1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612064   
Orphanet
MedgenGIGYF1
Genetic Testing Registry GIGYF1
NextProtO75420 [Medical]
TSGene64599
GENETestsGIGYF1
Target ValidationGIGYF1
Huge Navigator GIGYF1 [HugePedia]
snp3D : Map Gene to Disease64599
BioCentury BCIQGIGYF1
ClinGenGIGYF1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64599
Chemical/Pharm GKB GenePA162389554
Clinical trialGIGYF1
Miscellaneous
canSAR (ICR)GIGYF1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGIGYF1
EVEXGIGYF1
GoPubMedGIGYF1
iHOPGIGYF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:36 CEST 2017

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