Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GIMAP1 (GTPase, IMAP family member 1)

Identity

Alias_symbol (synonym)HIMAP1
IMAP38
IMAP1
IAN2
Other alias
HGNC (Hugo) GIMAP1
LocusID (NCBI) 170575
Atlas_Id 63781
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150716557 and ends at 150724280 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AGAP3 (7q36.1) / GIMAP1 (7q36.1)GIMAP1 (7q36.1) / PTPRM (18p11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GIMAP1   23237
Cards
Entrez_Gene (NCBI)GIMAP1  170575  GTPase, IMAP family member 1
AliasesHIMAP1; IAN2; IMAP1; IMAP38
GeneCards (Weizmann)GIMAP1
Ensembl hg19 (Hinxton)ENSG00000213203 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213203 [Gene_View]  chr7:150716557-150724280 [Contig_View]  GIMAP1 [Vega]
ICGC DataPortalENSG00000213203
TCGA cBioPortalGIMAP1
AceView (NCBI)GIMAP1
Genatlas (Paris)GIMAP1
WikiGenes170575
SOURCE (Princeton)GIMAP1
Genetics Home Reference (NIH)GIMAP1
Genomic and cartography
GoldenPath hg38 (UCSC)GIMAP1  -     chr7:150716557-150724280 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GIMAP1  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblGIMAP1 - 7q36.1 [CytoView hg19]  GIMAP1 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIGIMAP1 [Mapview hg19]  GIMAP1 [Mapview hg38]
OMIM608084   
Gene and transcription
Genbank (Entrez)AJ306287 AK091818 AK315127 AW029312 BC040736
RefSeq transcript (Entrez)NM_130759
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GIMAP1
Cluster EST : UnigeneHs.647079 [ NCBI ]
CGAP (NCI)Hs.647079
Alternative Splicing GalleryENSG00000213203
Gene ExpressionGIMAP1 [ NCBI-GEO ]   GIMAP1 [ EBI - ARRAY_EXPRESS ]   GIMAP1 [ SEEK ]   GIMAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GIMAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)170575
GTEX Portal (Tissue expression)GIMAP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWP7
Splice isoforms : SwissVarQ8WWP7
PhosPhoSitePlusQ8WWP7
Domaine pattern : Prosite (Expaxy)G_AIG1 (PS51720)   
Domains : Interpro (EBI)G_AIG1    P-loop_NTPase   
Domain families : Pfam (Sanger)AIG1 (PF04548)   
Domain families : Pfam (NCBI)pfam04548   
Conserved Domain (NCBI)GIMAP1
DMDM Disease mutations170575
Blocks (Seattle)GIMAP1
PDB (SRS)3V70   
PDB (PDBSum)3V70   
PDB (IMB)3V70   
PDB (RSDB)3V70   
Structural Biology KnowledgeBase3V70   
SCOP (Structural Classification of Proteins)3V70   
CATH (Classification of proteins structures)3V70   
SuperfamilyQ8WWP7
Human Protein AtlasENSG00000213203
Peptide AtlasQ8WWP7
HPRD16278
IPIIPI00103387   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWP7
IntAct (EBI)Q8WWP7
FunCoupENSG00000213203
BioGRIDGIMAP1
STRING (EMBL)GIMAP1
ZODIACGIMAP1
Ontologies - Pathways
QuickGOQ8WWP7
Ontology : AmiGOGolgi membrane  GTP binding  endoplasmic reticulum  endoplasmic reticulum membrane  integral component of membrane  
Ontology : EGO-EBIGolgi membrane  GTP binding  endoplasmic reticulum  endoplasmic reticulum membrane  integral component of membrane  
NDEx NetworkGIMAP1
Atlas of Cancer Signalling NetworkGIMAP1
Wikipedia pathwaysGIMAP1
Orthology - Evolution
OrthoDB170575
GeneTree (enSembl)ENSG00000213203
Phylogenetic Trees/Animal Genes : TreeFamGIMAP1
HOVERGENQ8WWP7
HOGENOMQ8WWP7
Homologs : HomoloGeneGIMAP1
Homology/Alignments : Family Browser (UCSC)GIMAP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGIMAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GIMAP1
dbVarGIMAP1
ClinVarGIMAP1
1000_GenomesGIMAP1 
Exome Variant ServerGIMAP1
ExAC (Exome Aggregation Consortium)GIMAP1 (select the gene name)
Genetic variants : HAPMAP170575
Genomic Variants (DGV)GIMAP1 [DGVbeta]
DECIPHERGIMAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGIMAP1 
Mutations
ICGC Data PortalGIMAP1 
TCGA Data PortalGIMAP1 
Broad Tumor PortalGIMAP1
OASIS PortalGIMAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGIMAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGIMAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GIMAP1
DgiDB (Drug Gene Interaction Database)GIMAP1
DoCM (Curated mutations)GIMAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GIMAP1 (select a term)
intoGenGIMAP1
Cancer3DGIMAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608084   
Orphanet
MedgenGIMAP1
Genetic Testing Registry GIMAP1
NextProtQ8WWP7 [Medical]
TSGene170575
GENETestsGIMAP1
Huge Navigator GIMAP1 [HugePedia]
snp3D : Map Gene to Disease170575
BioCentury BCIQGIMAP1
ClinGenGIMAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD170575
Chemical/Pharm GKB GenePA134978698
Clinical trialGIMAP1
Miscellaneous
canSAR (ICR)GIMAP1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGIMAP1
EVEXGIMAP1
GoPubMedGIMAP1
iHOPGIMAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:13:40 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.