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GIMAP2 (GTPase, IMAP family member 2)

Identity

Alias_symbol (synonym)DKFZp586D0824
HIMAP2
IMAP2
IAN12
Other alias
HGNC (Hugo) GIMAP2
LocusID (NCBI) 26157
Atlas_Id 63783
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150685706 and ends at 150693640 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
AGAP3 (7q36.1) / GIMAP2 (7q36.1)GIMAP2 (7q36.1) / GIMAP2 (7q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GIMAP2   21789
Cards
Entrez_Gene (NCBI)GIMAP2  26157  GTPase, IMAP family member 2
AliasesHIMAP2; IAN12; IMAP2
GeneCards (Weizmann)GIMAP2
Ensembl hg19 (Hinxton)ENSG00000106560 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106560 [Gene_View]  chr7:150685706-150693640 [Contig_View]  GIMAP2 [Vega]
ICGC DataPortalENSG00000106560
TCGA cBioPortalGIMAP2
AceView (NCBI)GIMAP2
Genatlas (Paris)GIMAP2
WikiGenes26157
SOURCE (Princeton)GIMAP2
Genetics Home Reference (NIH)GIMAP2
Genomic and cartography
GoldenPath hg38 (UCSC)GIMAP2  -     chr7:150685706-150693640 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GIMAP2  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblGIMAP2 - 7q36.1 [CytoView hg19]  GIMAP2 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIGIMAP2 [Mapview hg19]  GIMAP2 [Mapview hg38]
OMIM608085   
Gene and transcription
Genbank (Entrez)AK074199 AL110151 BC013934 BC032345 BG687383
RefSeq transcript (Entrez)NM_015660
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GIMAP2
Cluster EST : UnigeneHs.647071 [ NCBI ]
CGAP (NCI)Hs.647071
Alternative Splicing GalleryENSG00000106560
Gene ExpressionGIMAP2 [ NCBI-GEO ]   GIMAP2 [ EBI - ARRAY_EXPRESS ]   GIMAP2 [ SEEK ]   GIMAP2 [ MEM ]
Gene Expression Viewer (FireBrowse)GIMAP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26157
GTEX Portal (Tissue expression)GIMAP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UG22   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UG22  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UG22
Splice isoforms : SwissVarQ9UG22
PhosPhoSitePlusQ9UG22
Domaine pattern : Prosite (Expaxy)G_AIG1 (PS51720)   
Domains : Interpro (EBI)G_AIG1    P-loop_NTPase   
Domain families : Pfam (Sanger)AIG1 (PF04548)   
Domain families : Pfam (NCBI)pfam04548   
Conserved Domain (NCBI)GIMAP2
DMDM Disease mutations26157
Blocks (Seattle)GIMAP2
PDB (SRS)2XTM    2XTN    2XTO    2XTP    3P1J   
PDB (PDBSum)2XTM    2XTN    2XTO    2XTP    3P1J   
PDB (IMB)2XTM    2XTN    2XTO    2XTP    3P1J   
PDB (RSDB)2XTM    2XTN    2XTO    2XTP    3P1J   
Structural Biology KnowledgeBase2XTM    2XTN    2XTO    2XTP    3P1J   
SCOP (Structural Classification of Proteins)2XTM    2XTN    2XTO    2XTP    3P1J   
CATH (Classification of proteins structures)2XTM    2XTN    2XTO    2XTP    3P1J   
SuperfamilyQ9UG22
Human Protein AtlasENSG00000106560
Peptide AtlasQ9UG22
HPRD16279
IPIIPI00022139   IPI00947097   
Protein Interaction databases
DIP (DOE-UCLA)Q9UG22
IntAct (EBI)Q9UG22
FunCoupENSG00000106560
BioGRIDGIMAP2
STRING (EMBL)GIMAP2
ZODIACGIMAP2
Ontologies - Pathways
QuickGOQ9UG22
Ontology : AmiGOGTP binding  cytoplasm  lipid particle  integral component of membrane  
Ontology : EGO-EBIGTP binding  cytoplasm  lipid particle  integral component of membrane  
NDEx NetworkGIMAP2
Atlas of Cancer Signalling NetworkGIMAP2
Wikipedia pathwaysGIMAP2
Orthology - Evolution
OrthoDB26157
GeneTree (enSembl)ENSG00000106560
Phylogenetic Trees/Animal Genes : TreeFamGIMAP2
HOVERGENQ9UG22
HOGENOMQ9UG22
Homologs : HomoloGeneGIMAP2
Homology/Alignments : Family Browser (UCSC)GIMAP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGIMAP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GIMAP2
dbVarGIMAP2
ClinVarGIMAP2
1000_GenomesGIMAP2 
Exome Variant ServerGIMAP2
ExAC (Exome Aggregation Consortium)GIMAP2 (select the gene name)
Genetic variants : HAPMAP26157
Genomic Variants (DGV)GIMAP2 [DGVbeta]
DECIPHERGIMAP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGIMAP2 
Mutations
ICGC Data PortalGIMAP2 
TCGA Data PortalGIMAP2 
Broad Tumor PortalGIMAP2
OASIS PortalGIMAP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGIMAP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGIMAP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GIMAP2
DgiDB (Drug Gene Interaction Database)GIMAP2
DoCM (Curated mutations)GIMAP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GIMAP2 (select a term)
intoGenGIMAP2
Cancer3DGIMAP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608085   
Orphanet
MedgenGIMAP2
Genetic Testing Registry GIMAP2
NextProtQ9UG22 [Medical]
TSGene26157
GENETestsGIMAP2
Huge Navigator GIMAP2 [HugePedia]
snp3D : Map Gene to Disease26157
BioCentury BCIQGIMAP2
ClinGenGIMAP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26157
Chemical/Pharm GKB GenePA134984698
Clinical trialGIMAP2
Miscellaneous
canSAR (ICR)GIMAP2 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGIMAP2
EVEXGIMAP2
GoPubMedGIMAP2
iHOPGIMAP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:13:41 CEST 2017

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