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GIMAP4 (GTPase, IMAP family member 4)

Identity

Other namesIAN-1
IAN1
IMAP4
MSTP062
HGNC (Hugo) GIMAP4
LocusID (NCBI) 55303
Atlas_Id 40823
Location 7q36.1
Location_base_pair Starts at 150264458 and ends at 150271041 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GIMAP4   21872
Cards
Entrez_Gene (NCBI)GIMAP4  55303  GTPase, IMAP family member 4
GeneCards (Weizmann)GIMAP4
Ensembl hg19 (Hinxton)ENSG00000133574 [Gene_View]  chr7:150264458-150271041 [Contig_View]  GIMAP4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133574 [Gene_View]  chr7:150264458-150271041 [Contig_View]  GIMAP4 [Vega]
ICGC DataPortalENSG00000133574
TCGA cBioPortalGIMAP4
AceView (NCBI)GIMAP4
Genatlas (Paris)GIMAP4
WikiGenes55303
SOURCE (Princeton)GIMAP4
Genomic and cartography
GoldenPath hg19 (UCSC)GIMAP4  -     chr7:150264458-150271041 +  7q36.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GIMAP4  -     7q36.1   [Description]    (hg38-Dec_2013)
EnsemblGIMAP4 - 7q36.1 [CytoView hg19]  GIMAP4 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIGIMAP4 [Mapview hg19]  GIMAP4 [Mapview hg38]
OMIM608087   
Gene and transcription
Genbank (Entrez)AF117333 AJ227872 AK001972 AK301441 AK301606
RefSeq transcript (Entrez)NM_018326
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)GIMAP4
Cluster EST : UnigeneHs.648582 [ NCBI ]
CGAP (NCI)Hs.648582
Alternative Splicing : Fast-db (Paris)GSHG0027874
Alternative Splicing GalleryENSG00000133574
Gene ExpressionGIMAP4 [ NCBI-GEO ]     GIMAP4 [ SEEK ]   GIMAP4 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)55303
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUV9 (Uniprot)
NextProtQ9NUV9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NUV9
Splice isoforms : SwissVarQ9NUV9 (Swissvar)
PhosPhoSitePlusQ9NUV9
Domaine pattern : Prosite (Expaxy)G_AIG1 (PS51720)   
Domains : Interpro (EBI)G_AIG1    P-loop_NTPase   
Domain families : Pfam (Sanger)AIG1 (PF04548)   
Domain families : Pfam (NCBI)pfam04548   
DMDM Disease mutations55303
Blocks (Seattle)GIMAP4
PDB (SRS)3LXX   
PDB (PDBSum)3LXX   
PDB (IMB)3LXX   
PDB (RSDB)3LXX   
Structural Biology KnowledgeBase3LXX   
SCOP (Structural Classification of Proteins)3LXX   
CATH (Classification of proteins structures)3LXX   
Human Protein AtlasENSG00000133574
Peptide AtlasQ9NUV9
HPRD16281
IPIIPI00939265   IPI00908338   IPI00019563   IPI00947057   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUV9
IntAct (EBI)Q9NUV9
FunCoupENSG00000133574
BioGRIDGIMAP4
IntegromeDBGIMAP4
STRING (EMBL)GIMAP4
ZODIACGIMAP4
Ontologies - Pathways
QuickGOQ9NUV9
Ontology : AmiGOGTP binding  cytosol  
Ontology : EGO-EBIGTP binding  cytosol  
Protein Interaction DatabaseGIMAP4
Atlas of Cancer Signalling NetworkGIMAP4
Wikipedia pathwaysGIMAP4
Orthology - Evolution
OrthoDB55303
GeneTree (enSembl)ENSG00000133574
Phylogenetic Trees/Animal Genes : TreeFamGIMAP4
Homologs : HomoloGeneGIMAP4
Homology/Alignments : Family Browser (UCSC)GIMAP4
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGIMAP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GIMAP4
dbVarGIMAP4
ClinVarGIMAP4
1000_GenomesGIMAP4 
Exome Variant ServerGIMAP4
Exome Aggregation Consortium (ExAC)ENSG00000133574
SNP (GeneSNP Utah)GIMAP4
SNP : HGBaseGIMAP4
Genetic variants : HAPMAPGIMAP4
Genomic Variants (DGV)GIMAP4 [DGVbeta]
Mutations
ICGC Data PortalGIMAP4 
TCGA Data PortalGIMAP4 
Tumor PortalGIMAP4
TCGA Copy Number PortalGIMAP4
Somatic Mutations in Cancer : COSMICGIMAP4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GIMAP4
DgiDB (Drug Gene Interaction Database)GIMAP4
DoCM (Curated mutations)GIMAP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GIMAP4 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)7:150264458-150271041
CONAN: Copy Number AnalysisGIMAP4 
Mutations and Diseases : HGMDGIMAP4
OMIM608087   
MedgenGIMAP4
NextProtQ9NUV9 [Medical]
TSGene55303
GENETestsGIMAP4
Huge Navigator GIMAP4 [HugePedia]  GIMAP4 [HugeCancerGEM]
snp3D : Map Gene to Disease55303
BioCentury BCIQGIMAP4
General knowledge
Chemical/Protein Interactions : CTD55303
Chemical/Pharm GKB GenePA128394681
Clinical trialGIMAP4
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGIMAP4
GoPubMedGIMAP4
iHOPGIMAP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:42:08 CET 2016

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