Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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GIMAP4 (GTPase, IMAP family member 4)

Identity

Other namesIAN-1
IAN1
IMAP4
MSTP062
HGNC (Hugo) GIMAP4
LocusID (NCBI) 55303
Location 7q36.1
Location_base_pair Starts at 150264458 and ends at 150271041 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GIMAP4   21872
Cards
Entrez_Gene (NCBI)GIMAP4  55303  GTPase, IMAP family member 4
GeneCards (Weizmann)GIMAP4
Ensembl hg19 (Hinxton)ENSG00000133574 [Gene_View]  chr7:150264458-150271041 [Contig_View]  GIMAP4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000133574 [Gene_View]  chr7:150264458-150271041 [Contig_View]  GIMAP4 [Vega]
ICGC DataPortalENSG00000133574
cBioPortalGIMAP4
AceView (NCBI)GIMAP4
Genatlas (Paris)GIMAP4
WikiGenes55303
SOURCE (Princeton)GIMAP4
Genomic and cartography
GoldenPath hg19 (UCSC)GIMAP4  -     chr7:150264458-150271041 +  7q36.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GIMAP4  -     7q36.1   [Description]    (hg38-Dec_2013)
EnsemblGIMAP4 - 7q36.1 [CytoView hg19]  GIMAP4 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIGIMAP4 [Mapview hg19]  GIMAP4 [Mapview hg38]
OMIM608087   
Gene and transcription
Genbank (Entrez)AF117333 AJ227872 AK001972 AK301441 AK301606
RefSeq transcript (Entrez)NM_018326
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)GIMAP4
Cluster EST : UnigeneHs.648582 [ NCBI ]
CGAP (NCI)Hs.648582
Alternative Splicing : Fast-db (Paris)GSHG0027874
Alternative Splicing GalleryENSG00000133574
Gene ExpressionGIMAP4 [ NCBI-GEO ]     GIMAP4 [ SEEK ]   GIMAP4 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NUV9 (Uniprot)
NextProtQ9NUV9  [Medical]
With graphics : InterProQ9NUV9
Splice isoforms : SwissVarQ9NUV9 (Swissvar)
Domaine pattern : Prosite (Expaxy)G_AIG1 (PS51720)   
Domains : Interpro (EBI)G_AIG1    P-loop_NTPase   
Related proteins : CluSTrQ9NUV9
Domain families : Pfam (Sanger)AIG1 (PF04548)   
Domain families : Pfam (NCBI)pfam04548   
DMDM Disease mutations55303
Blocks (Seattle)Q9NUV9
PDB (SRS)3LXX   
PDB (PDBSum)3LXX   
PDB (IMB)3LXX   
PDB (RSDB)3LXX   
Human Protein AtlasENSG00000133574
Peptide AtlasQ9NUV9
HPRD16281
IPIIPI00939265   IPI00908338   IPI00019563   IPI00947057   
Protein Interaction databases
DIP (DOE-UCLA)Q9NUV9
IntAct (EBI)Q9NUV9
FunCoupENSG00000133574
BioGRIDGIMAP4
IntegromeDBGIMAP4
STRING (EMBL)GIMAP4
Ontologies - Pathways
QuickGOQ9NUV9
Ontology : AmiGOGTP binding  cytosol  
Ontology : EGO-EBIGTP binding  cytosol  
Protein Interaction DatabaseGIMAP4
DoCM (Curated mutations)GIMAP4
Wikipedia pathwaysGIMAP4
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGIMAP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GIMAP4
dbVarGIMAP4
ClinVarGIMAP4
1000_GenomesGIMAP4 
Exome Variant ServerGIMAP4
SNP (GeneSNP Utah)GIMAP4
SNP : HGBaseGIMAP4
Genetic variants : HAPMAPGIMAP4
Genomic Variants (DGV)GIMAP4 [DGVbeta]
Mutations
ICGC Data PortalENSG00000133574 
Somatic Mutations in Cancer : COSMICGIMAP4 
CONAN: Copy Number AnalysisGIMAP4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)7:150264458-150271041
Mutations and Diseases : HGMDGIMAP4
OMIM608087   
MedgenGIMAP4
NextProtQ9NUV9 [Medical]
GENETestsGIMAP4
Disease Genetic AssociationGIMAP4
Huge Navigator GIMAP4 [HugePedia]  GIMAP4 [HugeCancerGEM]
snp3D : Map Gene to Disease55303
DGIdb (Drug Gene Interaction db)GIMAP4
General knowledge
Homologs : HomoloGeneGIMAP4
Homology/Alignments : Family Browser (UCSC)GIMAP4
Phylogenetic Trees/Animal Genes : TreeFamGIMAP4
Chemical/Protein Interactions : CTD55303
Chemical/Pharm GKB GenePA128394681
Clinical trialGIMAP4
Cancer Resource (Charite)ENSG00000133574
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
CoreMineGIMAP4
GoPubMedGIMAP4
iHOPGIMAP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:29:23 CET 2015

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jlhuret@AtlasGeneticsOncology.org.