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GIMAP5 (GTPase, IMAP family member 5)

Identity

Alias_namesIAN4L1
immune associated nucleotide 4 like 1 (mouse)
Alias_symbol (synonym)HIMAP3
IAN5
Other aliasIAN-5
IAN4
IMAP3
IROD
HGNC (Hugo) GIMAP5
LocusID (NCBI) 55340
Atlas_Id 63784
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 150434436 and ends at 150440737 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CUL1 (7q36.1) / GIMAP5 (7q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GIMAP5   18005
Cards
Entrez_Gene (NCBI)GIMAP5  55340  GTPase, IMAP family member 5
AliasesHIMAP3; IAN-5; IAN4; IAN4L1; 
IAN5; IMAP3; IROD
GeneCards (Weizmann)GIMAP5
Ensembl hg19 (Hinxton)ENSG00000196329 [Gene_View]  chr7:150434436-150440737 [Contig_View]  GIMAP5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196329 [Gene_View]  chr7:150434436-150440737 [Contig_View]  GIMAP5 [Vega]
ICGC DataPortalENSG00000196329
TCGA cBioPortalGIMAP5
AceView (NCBI)GIMAP5
Genatlas (Paris)GIMAP5
WikiGenes55340
SOURCE (Princeton)GIMAP5
Genetics Home Reference (NIH)GIMAP5
Genomic and cartography
GoldenPath hg19 (UCSC)GIMAP5  -     chr7:150434436-150440737 +  7q36.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GIMAP5  -     7q36.1   [Description]    (hg38-Dec_2013)
EnsemblGIMAP5 - 7q36.1 [CytoView hg19]  GIMAP5 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIGIMAP5 [Mapview hg19]  GIMAP5 [Mapview hg38]
OMIM608086   
Gene and transcription
Genbank (Entrez)AK002158 AK055568 AK297881 AL557446 AV762634
RefSeq transcript (Entrez)NM_018384
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007933 NW_004929333
Consensus coding sequences : CCDS (NCBI)GIMAP5
Cluster EST : UnigeneHs.698139 [ NCBI ]
CGAP (NCI)Hs.698139
Alternative Splicing GalleryENSG00000196329
Gene ExpressionGIMAP5 [ NCBI-GEO ]   GIMAP5 [ EBI - ARRAY_EXPRESS ]   GIMAP5 [ SEEK ]   GIMAP5 [ MEM ]
Gene Expression Viewer (FireBrowse)GIMAP5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55340
GTEX Portal (Tissue expression)GIMAP5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96F15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96F15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96F15
Splice isoforms : SwissVarQ96F15
PhosPhoSitePlusQ96F15
Domaine pattern : Prosite (Expaxy)G_AIG1 (PS51720)   
Domains : Interpro (EBI)G_AIG1    P-loop_NTPase   
Domain families : Pfam (Sanger)AIG1 (PF04548)   
Domain families : Pfam (NCBI)pfam04548   
Conserved Domain (NCBI)GIMAP5
DMDM Disease mutations55340
Blocks (Seattle)GIMAP5
SuperfamilyQ96F15
Human Protein AtlasENSG00000196329
Peptide AtlasQ96F15
HPRD16280
IPIIPI00940072   IPI00075561   IPI00304937   
Protein Interaction databases
DIP (DOE-UCLA)Q96F15
IntAct (EBI)Q96F15
FunCoupENSG00000196329
BioGRIDGIMAP5
STRING (EMBL)GIMAP5
ZODIACGIMAP5
Ontologies - Pathways
QuickGOQ96F15
Ontology : AmiGOtemperature homeostasis  positive regulation of natural killer cell cytokine production  positive regulation of humoral immune response mediated by circulating immunoglobulin  protein binding  GTP binding  mitochondrial outer membrane  lysosome  positive regulation of calcium ion transport into cytosol  integral component of membrane  T cell differentiation  negative regulation of interferon-gamma production  positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation  myeloid dendritic cell differentiation  T cell homeostasis  negative regulation of apoptotic process  negative regulation of nitric oxide biosynthetic process  positive regulation of gamma-delta T cell differentiation  positive regulation of membrane potential  positive regulation of natural killer cell mediated cytotoxicity  regulation of mitochondrial membrane permeability  negative regulation of T cell activation  negative regulation of lipid catabolic process  
Ontology : EGO-EBItemperature homeostasis  positive regulation of natural killer cell cytokine production  positive regulation of humoral immune response mediated by circulating immunoglobulin  protein binding  GTP binding  mitochondrial outer membrane  lysosome  positive regulation of calcium ion transport into cytosol  integral component of membrane  T cell differentiation  negative regulation of interferon-gamma production  positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation  myeloid dendritic cell differentiation  T cell homeostasis  negative regulation of apoptotic process  negative regulation of nitric oxide biosynthetic process  positive regulation of gamma-delta T cell differentiation  positive regulation of membrane potential  positive regulation of natural killer cell mediated cytotoxicity  regulation of mitochondrial membrane permeability  negative regulation of T cell activation  negative regulation of lipid catabolic process  
NDEx NetworkGIMAP5
Atlas of Cancer Signalling NetworkGIMAP5
Wikipedia pathwaysGIMAP5
Orthology - Evolution
OrthoDB55340
GeneTree (enSembl)ENSG00000196329
Phylogenetic Trees/Animal Genes : TreeFamGIMAP5
HOVERGENQ96F15
HOGENOMQ96F15
Homologs : HomoloGeneGIMAP5
Homology/Alignments : Family Browser (UCSC)GIMAP5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGIMAP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GIMAP5
dbVarGIMAP5
ClinVarGIMAP5
1000_GenomesGIMAP5 
Exome Variant ServerGIMAP5
ExAC (Exome Aggregation Consortium)GIMAP5 (select the gene name)
Genetic variants : HAPMAP55340
Genomic Variants (DGV)GIMAP5 [DGVbeta]
DECIPHER (Syndromes)7:150434436-150440737  ENSG00000196329
CONAN: Copy Number AnalysisGIMAP5 
Mutations
ICGC Data PortalGIMAP5 
TCGA Data PortalGIMAP5 
Broad Tumor PortalGIMAP5
OASIS PortalGIMAP5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGIMAP5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGIMAP5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GIMAP5
DgiDB (Drug Gene Interaction Database)GIMAP5
DoCM (Curated mutations)GIMAP5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GIMAP5 (select a term)
intoGenGIMAP5
Cancer3DGIMAP5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608086   
Orphanet
MedgenGIMAP5
Genetic Testing Registry GIMAP5
NextProtQ96F15 [Medical]
TSGene55340
GENETestsGIMAP5
Huge Navigator GIMAP5 [HugePedia]
snp3D : Map Gene to Disease55340
BioCentury BCIQGIMAP5
ClinGenGIMAP5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55340
Chemical/Pharm GKB GenePA29578
Clinical trialGIMAP5
Miscellaneous
canSAR (ICR)GIMAP5 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGIMAP5
EVEXGIMAP5
GoPubMedGIMAP5
iHOPGIMAP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:06 CET 2017

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