Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GIMD1 (GIMAP family P-loop NTPase domain containing 1)

Identity

Other alias-
HGNC (Hugo) GIMD1
LocusID (NCBI) 100507096
Atlas_Id 63788
Location 4q24  [Link to chromosome band 4q24]
Location_base_pair Starts at 107279340 and ends at 107288592 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GIMD1   44141
Cards
Entrez_Gene (NCBI)GIMD1  100507096  GIMAP family P-loop NTPase domain containing 1
Aliases
GeneCards (Weizmann)GIMD1
Ensembl hg19 (Hinxton) [Gene_View]  chr4:107279340-107288592 [Contig_View]  GIMD1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:107279340-107288592 [Contig_View]  GIMD1 [Vega]
TCGA cBioPortalGIMD1
AceView (NCBI)GIMD1
Genatlas (Paris)GIMD1
WikiGenes100507096
SOURCE (Princeton)GIMD1
Genetics Home Reference (NIH)GIMD1
Genomic and cartography
GoldenPath hg19 (UCSC)GIMD1  -     chr4:107279340-107288592 -  4q24   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GIMD1  -     4q24   [Description]    (hg38-Dec_2013)
EnsemblGIMD1 - 4q24 [CytoView hg19]  GIMD1 - 4q24 [CytoView hg38]
Mapping of homologs : NCBIGIMD1 [Mapview hg19]  GIMD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)DN831977 HG497146
RefSeq transcript (Entrez)NM_001195138
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_016354 NW_004929320
Consensus coding sequences : CCDS (NCBI)GIMD1
Cluster EST : UnigeneHs.722750 [ NCBI ]
CGAP (NCI)Hs.722750
Gene ExpressionGIMD1 [ NCBI-GEO ]   GIMD1 [ EBI - ARRAY_EXPRESS ]   GIMD1 [ SEEK ]   GIMD1 [ MEM ]
Gene Expression Viewer (FireBrowse)GIMD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100507096
GTEX Portal (Tissue expression)GIMD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0DJR0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0DJR0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0DJR0
Splice isoforms : SwissVarP0DJR0
PhosPhoSitePlusP0DJR0
Domaine pattern : Prosite (Expaxy)G_AIG1 (PS51720)   
Domains : Interpro (EBI)G_AIG1    P-loop_NTPase   
Domain families : Pfam (Sanger)AIG1 (PF04548)   
Domain families : Pfam (NCBI)pfam04548   
Conserved Domain (NCBI)GIMD1
DMDM Disease mutations100507096
Blocks (Seattle)GIMD1
SuperfamilyP0DJR0
Peptide AtlasP0DJR0
IPIIPI00981045   
Protein Interaction databases
DIP (DOE-UCLA)P0DJR0
IntAct (EBI)P0DJR0
BioGRIDGIMD1
STRING (EMBL)GIMD1
ZODIACGIMD1
Ontologies - Pathways
QuickGOP0DJR0
Ontology : AmiGOGTP binding  
Ontology : EGO-EBIGTP binding  
NDEx NetworkGIMD1
Atlas of Cancer Signalling NetworkGIMD1
Wikipedia pathwaysGIMD1
Orthology - Evolution
OrthoDB100507096
Phylogenetic Trees/Animal Genes : TreeFamGIMD1
HOVERGENP0DJR0
HOGENOMP0DJR0
Homologs : HomoloGeneGIMD1
Homology/Alignments : Family Browser (UCSC)GIMD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGIMD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GIMD1
dbVarGIMD1
ClinVarGIMD1
1000_GenomesGIMD1 
Exome Variant ServerGIMD1
ExAC (Exome Aggregation Consortium)GIMD1 (select the gene name)
Genetic variants : HAPMAP100507096
Genomic Variants (DGV)GIMD1 [DGVbeta]
DECIPHER (Syndromes)4:107279340-107288592  
CONAN: Copy Number AnalysisGIMD1 
Mutations
ICGC Data PortalGIMD1 
TCGA Data PortalGIMD1 
Broad Tumor PortalGIMD1
OASIS PortalGIMD1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGIMD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GIMD1
DgiDB (Drug Gene Interaction Database)GIMD1
DoCM (Curated mutations)GIMD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GIMD1 (select a term)
intoGenGIMD1
Cancer3DGIMD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGIMD1
Genetic Testing Registry GIMD1
NextProtP0DJR0 [Medical]
TSGene100507096
GENETestsGIMD1
Huge Navigator GIMD1 [HugePedia]
snp3D : Map Gene to Disease100507096
BioCentury BCIQGIMD1
ClinGenGIMD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507096
Clinical trialGIMD1
Miscellaneous
canSAR (ICR)GIMD1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGIMD1
EVEXGIMD1
GoPubMedGIMD1
iHOPGIMD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:06:07 CET 2017

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