Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GIN1 (gypsy retrotransposon integrase 1)

Identity

Alias_namesZH2C2
zinc finger
Alias_symbol (synonym)FLJ20125
GIN-1
TGIN1
Other alias
HGNC (Hugo) GIN1
LocusID (NCBI) 54826
Atlas_Id 54332
Location 5q21.1  [Link to chromosome band 5q21]
Location_base_pair Starts at 102421704 and ends at 102455842 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GIN1 (5q21.1) / PKHD1L1 (8q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GIN1   25959
Cards
Entrez_Gene (NCBI)GIN1  54826  gypsy retrotransposon integrase 1
AliasesGIN-1; TGIN1; ZH2C2
GeneCards (Weizmann)GIN1
Ensembl hg19 (Hinxton)ENSG00000145723 [Gene_View]  chr5:102421704-102455842 [Contig_View]  GIN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145723 [Gene_View]  chr5:102421704-102455842 [Contig_View]  GIN1 [Vega]
ICGC DataPortalENSG00000145723
TCGA cBioPortalGIN1
AceView (NCBI)GIN1
Genatlas (Paris)GIN1
WikiGenes54826
SOURCE (Princeton)GIN1
Genetics Home Reference (NIH)GIN1
Genomic and cartography
GoldenPath hg19 (UCSC)GIN1  -     chr5:102421704-102455842 -  5q21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GIN1  -     5q21.1   [Description]    (hg38-Dec_2013)
EnsemblGIN1 - 5q21.1 [CytoView hg19]  GIN1 - 5q21.1 [CytoView hg38]
Mapping of homologs : NCBIGIN1 [Mapview hg19]  GIN1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000132 AK225572 AK295796 BC015325 BC151135
RefSeq transcript (Entrez)NM_001317954 NM_017676
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929323
Consensus coding sequences : CCDS (NCBI)GIN1
Cluster EST : UnigeneHs.24088 [ NCBI ]
CGAP (NCI)Hs.24088
Alternative Splicing GalleryENSG00000145723
Gene ExpressionGIN1 [ NCBI-GEO ]   GIN1 [ EBI - ARRAY_EXPRESS ]   GIN1 [ SEEK ]   GIN1 [ MEM ]
Gene Expression Viewer (FireBrowse)GIN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54826
GTEX Portal (Tissue expression)GIN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXP7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXP7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXP7
Splice isoforms : SwissVarQ9NXP7
PhosPhoSitePlusQ9NXP7
Domaine pattern : Prosite (Expaxy)INTEGRASE (PS50994)   
Domains : Interpro (EBI)Integrase_cat-core    RNaseH-like_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GIN1
DMDM Disease mutations54826
Blocks (Seattle)GIN1
SuperfamilyQ9NXP7
Human Protein AtlasENSG00000145723
Peptide AtlasQ9NXP7
HPRD07878
IPIIPI00464997   IPI00954559   IPI00964825   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXP7
IntAct (EBI)Q9NXP7
FunCoupENSG00000145723
BioGRIDGIN1
STRING (EMBL)GIN1
ZODIACGIN1
Ontologies - Pathways
QuickGOQ9NXP7
Ontology : AmiGOnucleic acid binding  DNA integration  
Ontology : EGO-EBInucleic acid binding  DNA integration  
NDEx NetworkGIN1
Atlas of Cancer Signalling NetworkGIN1
Wikipedia pathwaysGIN1
Orthology - Evolution
OrthoDB54826
GeneTree (enSembl)ENSG00000145723
Phylogenetic Trees/Animal Genes : TreeFamGIN1
HOVERGENQ9NXP7
HOGENOMQ9NXP7
Homologs : HomoloGeneGIN1
Homology/Alignments : Family Browser (UCSC)GIN1
Gene fusions - Rearrangements
Fusion : MitelmanGIN1/PKHD1L1 [5q21.1/8q23.1]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGIN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GIN1
dbVarGIN1
ClinVarGIN1
1000_GenomesGIN1 
Exome Variant ServerGIN1
ExAC (Exome Aggregation Consortium)GIN1 (select the gene name)
Genetic variants : HAPMAP54826
Genomic Variants (DGV)GIN1 [DGVbeta]
DECIPHER (Syndromes)5:102421704-102455842  ENSG00000145723
CONAN: Copy Number AnalysisGIN1 
Mutations
ICGC Data PortalGIN1 
TCGA Data PortalGIN1 
Broad Tumor PortalGIN1
OASIS PortalGIN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGIN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGIN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GIN1
DgiDB (Drug Gene Interaction Database)GIN1
DoCM (Curated mutations)GIN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GIN1 (select a term)
intoGenGIN1
Cancer3DGIN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGIN1
Genetic Testing Registry GIN1
NextProtQ9NXP7 [Medical]
TSGene54826
GENETestsGIN1
Huge Navigator GIN1 [HugePedia]
snp3D : Map Gene to Disease54826
BioCentury BCIQGIN1
ClinGenGIN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54826
Chemical/Pharm GKB GenePA162389674
Clinical trialGIN1
Miscellaneous
canSAR (ICR)GIN1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGIN1
EVEXGIN1
GoPubMedGIN1
iHOPGIN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:02:23 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.