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GINM1 (glycoprotein integral membrane 1)

Identity

Alias_namesC6orf72
chromosome 6 open reading frame 72
Alias_symbol (synonym)dJ12G14.2
Other alias
HGNC (Hugo) GINM1
LocusID (NCBI) 116254
Atlas_Id 63789
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 149566208 and ends at 149591751 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SCAF8 (6q25.2) / GINM1 (6q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q25;q25) SCAF8/GINM1


External links

Nomenclature
HGNC (Hugo)GINM1   21074
Cards
Entrez_Gene (NCBI)GINM1  116254  glycoprotein integral membrane 1
AliasesC6orf72
GeneCards (Weizmann)GINM1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:149566208-149591751 [Contig_View]  GINM1 [Vega]
TCGA cBioPortalGINM1
AceView (NCBI)GINM1
Genatlas (Paris)GINM1
WikiGenes116254
SOURCE (Princeton)GINM1
Genetics Home Reference (NIH)GINM1
Genomic and cartography
GoldenPath hg38 (UCSC)GINM1  -     chr6:149566208-149591751 +  6q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GINM1  -     6q25.1   [Description]    (hg19-Feb_2009)
EnsemblGINM1 - 6q25.1 [CytoView hg19]  GINM1 - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBIGINM1 [Mapview hg19]  GINM1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA903253 AI245018 AK289402 AK295690 AK308844
RefSeq transcript (Entrez)NM_138785
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GINM1
Cluster EST : UnigeneHs.438872 [ NCBI ]
CGAP (NCI)Hs.438872
Gene ExpressionGINM1 [ NCBI-GEO ]   GINM1 [ EBI - ARRAY_EXPRESS ]   GINM1 [ SEEK ]   GINM1 [ MEM ]
Gene Expression Viewer (FireBrowse)GINM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)116254
GTEX Portal (Tissue expression)GINM1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NU53   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NU53  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NU53
Splice isoforms : SwissVarQ9NU53
PhosPhoSitePlusQ9NU53
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GINM1
DMDM Disease mutations116254
Blocks (Seattle)GINM1
SuperfamilyQ9NU53
Peptide AtlasQ9NU53
HPRD12896
IPIIPI00026031   IPI00514046   
Protein Interaction databases
DIP (DOE-UCLA)Q9NU53
IntAct (EBI)Q9NU53
BioGRIDGINM1
STRING (EMBL)GINM1
ZODIACGINM1
Ontologies - Pathways
QuickGOQ9NU53
Ontology : AmiGOintegral component of membrane  extracellular exosome  
Ontology : EGO-EBIintegral component of membrane  extracellular exosome  
NDEx NetworkGINM1
Atlas of Cancer Signalling NetworkGINM1
Wikipedia pathwaysGINM1
Orthology - Evolution
OrthoDB116254
Phylogenetic Trees/Animal Genes : TreeFamGINM1
HOVERGENQ9NU53
HOGENOMQ9NU53
Homologs : HomoloGeneGINM1
Homology/Alignments : Family Browser (UCSC)GINM1
Gene fusions - Rearrangements
Fusion : QuiverGINM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGINM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GINM1
dbVarGINM1
ClinVarGINM1
1000_GenomesGINM1 
Exome Variant ServerGINM1
Varsome BrowserGINM1
Genetic variants : HAPMAP116254
Genomic Variants (DGV)GINM1 [DGVbeta]
DECIPHERGINM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGINM1 
Mutations
ICGC Data PortalGINM1 
TCGA Data PortalGINM1 
Broad Tumor PortalGINM1
OASIS PortalGINM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGINM1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGINM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GINM1
DgiDB (Drug Gene Interaction Database)GINM1
DoCM (Curated mutations)GINM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GINM1 (select a term)
intoGenGINM1
Cancer3DGINM1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGINM1
MedgenGINM1
Genetic Testing Registry GINM1
NextProtQ9NU53 [Medical]
TSGene116254
GENETestsGINM1
Target ValidationGINM1
Huge Navigator GINM1 [HugePedia]
snp3D : Map Gene to Disease116254
BioCentury BCIQGINM1
ClinGenGINM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116254
Chemical/Pharm GKB GenePA134959041
Clinical trialGINM1
Miscellaneous
canSAR (ICR)GINM1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGINM1
EVEXGINM1
GoPubMedGINM1
iHOPGINM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:47:18 CEST 2018

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