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GINS1 (GINS complex subunit 1)

Identity

Alias_namesGINS complex subunit 1 (Psf1 homolog)
Alias_symbol (synonym)KIAA0186
PSF1
Other alias
HGNC (Hugo) GINS1
LocusID (NCBI) 9837
Atlas_Id 51386
Location 20p11.21  [Link to chromosome band 20p11]
Location_base_pair Starts at 25388319 and ends at 25429191 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GINS1 (20p11.21) / SERINC1 (6q22.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GINS1   28980
Cards
Entrez_Gene (NCBI)GINS1  9837  GINS complex subunit 1
AliasesPSF1
GeneCards (Weizmann)GINS1
Ensembl hg19 (Hinxton)ENSG00000101003 [Gene_View]  chr20:25388319-25429191 [Contig_View]  GINS1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000101003 [Gene_View]  chr20:25388319-25429191 [Contig_View]  GINS1 [Vega]
ICGC DataPortalENSG00000101003
TCGA cBioPortalGINS1
AceView (NCBI)GINS1
Genatlas (Paris)GINS1
WikiGenes9837
SOURCE (Princeton)GINS1
Genetics Home Reference (NIH)GINS1
Genomic and cartography
GoldenPath hg19 (UCSC)GINS1  -     chr20:25388319-25429191 +  20p11.21   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GINS1  -     20p11.21   [Description]    (hg38-Dec_2013)
EnsemblGINS1 - 20p11.21 [CytoView hg19]  GINS1 - 20p11.21 [CytoView hg38]
Mapping of homologs : NCBIGINS1 [Mapview hg19]  GINS1 [Mapview hg38]
OMIM610608   
Gene and transcription
Genbank (Entrez)AK294593 BC012542 BP290581 D80008
RefSeq transcript (Entrez)NM_021067
RefSeq genomic (Entrez)NC_000020 NC_018931 NT_011387 NW_004929416
Consensus coding sequences : CCDS (NCBI)GINS1
Cluster EST : UnigeneHs.658464 [ NCBI ]
CGAP (NCI)Hs.658464
Alternative Splicing GalleryENSG00000101003
Gene ExpressionGINS1 [ NCBI-GEO ]   GINS1 [ EBI - ARRAY_EXPRESS ]   GINS1 [ SEEK ]   GINS1 [ MEM ]
Gene Expression Viewer (FireBrowse)GINS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9837
GTEX Portal (Tissue expression)GINS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14691   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14691  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14691
Splice isoforms : SwissVarQ14691
PhosPhoSitePlusQ14691
Domains : Interpro (EBI)GINS_Psf1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GINS1
DMDM Disease mutations9837
Blocks (Seattle)GINS1
PDB (SRS)2E9X    2EHO    2Q9Q   
PDB (PDBSum)2E9X    2EHO    2Q9Q   
PDB (IMB)2E9X    2EHO    2Q9Q   
PDB (RSDB)2E9X    2EHO    2Q9Q   
Structural Biology KnowledgeBase2E9X    2EHO    2Q9Q   
SCOP (Structural Classification of Proteins)2E9X    2EHO    2Q9Q   
CATH (Classification of proteins structures)2E9X    2EHO    2Q9Q   
SuperfamilyQ14691
Human Protein AtlasENSG00000101003
Peptide AtlasQ14691
HPRD11067
IPIIPI00032387   IPI00910150   
Protein Interaction databases
DIP (DOE-UCLA)Q14691
IntAct (EBI)Q14691
FunCoupENSG00000101003
BioGRIDGINS1
STRING (EMBL)GINS1
ZODIACGINS1
Ontologies - Pathways
QuickGOQ14691
Ontology : AmiGOGINS complex  inner cell mass cell proliferation  nucleus  nucleoplasm  cytoplasm  DNA strand elongation involved in DNA replication  DNA duplex unwinding  3'-5' DNA helicase activity  DNA strand elongation involved in mitotic DNA replication  
Ontology : EGO-EBIGINS complex  inner cell mass cell proliferation  nucleus  nucleoplasm  cytoplasm  DNA strand elongation involved in DNA replication  DNA duplex unwinding  3'-5' DNA helicase activity  DNA strand elongation involved in mitotic DNA replication  
NDEx NetworkGINS1
Atlas of Cancer Signalling NetworkGINS1
Wikipedia pathwaysGINS1
Orthology - Evolution
OrthoDB9837
GeneTree (enSembl)ENSG00000101003
Phylogenetic Trees/Animal Genes : TreeFamGINS1
HOVERGENQ14691
HOGENOMQ14691
Homologs : HomoloGeneGINS1
Homology/Alignments : Family Browser (UCSC)GINS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGINS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GINS1
dbVarGINS1
ClinVarGINS1
1000_GenomesGINS1 
Exome Variant ServerGINS1
ExAC (Exome Aggregation Consortium)GINS1 (select the gene name)
Genetic variants : HAPMAP9837
Genomic Variants (DGV)GINS1 [DGVbeta]
DECIPHER (Syndromes)20:25388319-25429191  ENSG00000101003
CONAN: Copy Number AnalysisGINS1 
Mutations
ICGC Data PortalGINS1 
TCGA Data PortalGINS1 
Broad Tumor PortalGINS1
OASIS PortalGINS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGINS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGINS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GINS1
DgiDB (Drug Gene Interaction Database)GINS1
DoCM (Curated mutations)GINS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GINS1 (select a term)
intoGenGINS1
Cancer3DGINS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610608   
Orphanet
MedgenGINS1
Genetic Testing Registry GINS1
NextProtQ14691 [Medical]
TSGene9837
GENETestsGINS1
Huge Navigator GINS1 [HugePedia]
snp3D : Map Gene to Disease9837
BioCentury BCIQGINS1
ClinGenGINS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9837
Chemical/Pharm GKB GenePA145008291
Clinical trialGINS1
Miscellaneous
canSAR (ICR)GINS1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGINS1
EVEXGINS1
GoPubMedGINS1
iHOPGINS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:07:25 CET 2017

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