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GINS4 (GINS complex subunit 4)

Identity

Alias_namesGINS complex subunit 4 (Sld5 homolog)
Alias_symbol (synonym)MGC14799
SLD5
Other alias
HGNC (Hugo) GINS4
LocusID (NCBI) 84296
Atlas_Id 55151
Location 8p11.21  [Link to chromosome band 8p11]
Location_base_pair Starts at 41529206 and ends at 41545046 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GINS4 (8p11.21) / GINS4 (8p11.21)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GINS4   28226
Cards
Entrez_Gene (NCBI)GINS4  84296  GINS complex subunit 4
AliasesSLD5
GeneCards (Weizmann)GINS4
Ensembl hg19 (Hinxton)ENSG00000147536 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000147536 [Gene_View]  chr8:41529206-41545046 [Contig_View]  GINS4 [Vega]
ICGC DataPortalENSG00000147536
TCGA cBioPortalGINS4
AceView (NCBI)GINS4
Genatlas (Paris)GINS4
WikiGenes84296
SOURCE (Princeton)GINS4
Genetics Home Reference (NIH)GINS4
Genomic and cartography
GoldenPath hg38 (UCSC)GINS4  -     chr8:41529206-41545046 +  8p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GINS4  -     8p11.21   [Description]    (hg19-Feb_2009)
EnsemblGINS4 - 8p11.21 [CytoView hg19]  GINS4 - 8p11.21 [CytoView hg38]
Mapping of homologs : NCBIGINS4 [Mapview hg19]  GINS4 [Mapview hg38]
OMIM610611   
Gene and transcription
Genbank (Entrez)AK095334 AK299207 AK313373 BC005995 BC027454
RefSeq transcript (Entrez)NM_032336
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GINS4
Cluster EST : UnigeneHs.656996 [ NCBI ]
CGAP (NCI)Hs.656996
Alternative Splicing GalleryENSG00000147536
Gene ExpressionGINS4 [ NCBI-GEO ]   GINS4 [ EBI - ARRAY_EXPRESS ]   GINS4 [ SEEK ]   GINS4 [ MEM ]
Gene Expression Viewer (FireBrowse)GINS4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84296
GTEX Portal (Tissue expression)GINS4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRT9
Splice isoforms : SwissVarQ9BRT9
PhosPhoSitePlusQ9BRT9
Domains : Interpro (EBI)GINS_A    GINS_Sld5    SLD5_C   
Domain families : Pfam (Sanger)Sld5 (PF05916)    SLD5_C (PF16922)   
Domain families : Pfam (NCBI)pfam05916    pfam16922   
Conserved Domain (NCBI)GINS4
DMDM Disease mutations84296
Blocks (Seattle)GINS4
PDB (SRS)2E9X    2EHO    2Q9Q   
PDB (PDBSum)2E9X    2EHO    2Q9Q   
PDB (IMB)2E9X    2EHO    2Q9Q   
PDB (RSDB)2E9X    2EHO    2Q9Q   
Structural Biology KnowledgeBase2E9X    2EHO    2Q9Q   
SCOP (Structural Classification of Proteins)2E9X    2EHO    2Q9Q   
CATH (Classification of proteins structures)2E9X    2EHO    2Q9Q   
SuperfamilyQ9BRT9
Human Protein AtlasENSG00000147536
Peptide AtlasQ9BRT9
HPRD11583
IPIIPI00031614   IPI00792990   IPI00910483   IPI01014114   IPI00983045   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRT9
IntAct (EBI)Q9BRT9
FunCoupENSG00000147536
BioGRIDGINS4
STRING (EMBL)GINS4
ZODIACGINS4
Ontologies - Pathways
QuickGOQ9BRT9
Ontology : AmiGOdouble-strand break repair via break-induced replication  GINS complex  inner cell mass cell proliferation  protein binding  nucleoplasm  cytoplasm  DNA replication initiation  DNA strand elongation involved in DNA replication  replication fork protection complex  DNA duplex unwinding  3'-5' DNA helicase activity  
Ontology : EGO-EBIdouble-strand break repair via break-induced replication  GINS complex  inner cell mass cell proliferation  protein binding  nucleoplasm  cytoplasm  DNA replication initiation  DNA strand elongation involved in DNA replication  replication fork protection complex  DNA duplex unwinding  3'-5' DNA helicase activity  
NDEx NetworkGINS4
Atlas of Cancer Signalling NetworkGINS4
Wikipedia pathwaysGINS4
Orthology - Evolution
OrthoDB84296
GeneTree (enSembl)ENSG00000147536
Phylogenetic Trees/Animal Genes : TreeFamGINS4
HOVERGENQ9BRT9
HOGENOMQ9BRT9
Homologs : HomoloGeneGINS4
Homology/Alignments : Family Browser (UCSC)GINS4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGINS4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GINS4
dbVarGINS4
ClinVarGINS4
1000_GenomesGINS4 
Exome Variant ServerGINS4
ExAC (Exome Aggregation Consortium)GINS4 (select the gene name)
Genetic variants : HAPMAP84296
Genomic Variants (DGV)GINS4 [DGVbeta]
DECIPHERGINS4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGINS4 
Mutations
ICGC Data PortalGINS4 
TCGA Data PortalGINS4 
Broad Tumor PortalGINS4
OASIS PortalGINS4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGINS4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGINS4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GINS4
DgiDB (Drug Gene Interaction Database)GINS4
DoCM (Curated mutations)GINS4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GINS4 (select a term)
intoGenGINS4
Cancer3DGINS4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610611   
Orphanet
MedgenGINS4
Genetic Testing Registry GINS4
NextProtQ9BRT9 [Medical]
TSGene84296
GENETestsGINS4
Target ValidationGINS4
Huge Navigator GINS4 [HugePedia]
snp3D : Map Gene to Disease84296
BioCentury BCIQGINS4
ClinGenGINS4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84296
Chemical/Pharm GKB GenePA145008337
Clinical trialGINS4
Miscellaneous
canSAR (ICR)GINS4 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGINS4
EVEXGINS4
GoPubMedGINS4
iHOPGINS4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:35:14 CEST 2017

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