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GIPC2 (GIPC PDZ domain containing family member 2)

Identity

Alias_namesGIPC PDZ domain containing family, member 2
Alias_symbol (synonym)FLJ20075
SEMCAP-2
Other aliasSEMCAP2
HGNC (Hugo) GIPC2
LocusID (NCBI) 54810
Atlas_Id 63791
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 78044962 and ends at 78138449 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GIPC2   18177
Cards
Entrez_Gene (NCBI)GIPC2  54810  GIPC PDZ domain containing family member 2
AliasesSEMCAP-2; SEMCAP2
GeneCards (Weizmann)GIPC2
Ensembl hg19 (Hinxton)ENSG00000137960 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137960 [Gene_View]  chr1:78044962-78138449 [Contig_View]  GIPC2 [Vega]
ICGC DataPortalENSG00000137960
TCGA cBioPortalGIPC2
AceView (NCBI)GIPC2
Genatlas (Paris)GIPC2
WikiGenes54810
SOURCE (Princeton)GIPC2
Genetics Home Reference (NIH)GIPC2
Genomic and cartography
GoldenPath hg38 (UCSC)GIPC2  -     chr1:78044962-78138449 +  1p31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GIPC2  -     1p31.1   [Description]    (hg19-Feb_2009)
EnsemblGIPC2 - 1p31.1 [CytoView hg19]  GIPC2 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIGIPC2 [Mapview hg19]  GIPC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB073737 AK000082 AK225941 AK307422 AL044570
RefSeq transcript (Entrez)NM_001304725 NM_017655
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GIPC2
Cluster EST : UnigeneHs.659356 [ NCBI ]
CGAP (NCI)Hs.659356
Alternative Splicing GalleryENSG00000137960
Gene ExpressionGIPC2 [ NCBI-GEO ]   GIPC2 [ EBI - ARRAY_EXPRESS ]   GIPC2 [ SEEK ]   GIPC2 [ MEM ]
Gene Expression Viewer (FireBrowse)GIPC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54810
GTEX Portal (Tissue expression)GIPC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TF65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TF65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TF65
Splice isoforms : SwissVarQ8TF65
PhosPhoSitePlusQ8TF65
Domaine pattern : Prosite (Expaxy)PDZ (PS50106)   
Domains : Interpro (EBI)GIPC1/2/3    PDZ   
Domain families : Pfam (Sanger)PDZ (PF00595)   
Domain families : Pfam (NCBI)pfam00595   
Domain families : Smart (EMBL)PDZ (SM00228)  
Conserved Domain (NCBI)GIPC2
DMDM Disease mutations54810
Blocks (Seattle)GIPC2
PDB (SRS)3GGE   
PDB (PDBSum)3GGE   
PDB (IMB)3GGE   
PDB (RSDB)3GGE   
Structural Biology KnowledgeBase3GGE   
SCOP (Structural Classification of Proteins)3GGE   
CATH (Classification of proteins structures)3GGE   
SuperfamilyQ8TF65
Human Protein AtlasENSG00000137960
Peptide AtlasQ8TF65
HPRD17040
IPIIPI00328296   
Protein Interaction databases
DIP (DOE-UCLA)Q8TF65
IntAct (EBI)Q8TF65
FunCoupENSG00000137960
BioGRIDGIPC2
STRING (EMBL)GIPC2
ZODIACGIPC2
Ontologies - Pathways
QuickGOQ8TF65
Ontology : AmiGOmolecular_function  protein binding  cytoplasm  biological_process  identical protein binding  extracellular exosome  
Ontology : EGO-EBImolecular_function  protein binding  cytoplasm  biological_process  identical protein binding  extracellular exosome  
NDEx NetworkGIPC2
Atlas of Cancer Signalling NetworkGIPC2
Wikipedia pathwaysGIPC2
Orthology - Evolution
OrthoDB54810
GeneTree (enSembl)ENSG00000137960
Phylogenetic Trees/Animal Genes : TreeFamGIPC2
HOVERGENQ8TF65
HOGENOMQ8TF65
Homologs : HomoloGeneGIPC2
Homology/Alignments : Family Browser (UCSC)GIPC2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGIPC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GIPC2
dbVarGIPC2
ClinVarGIPC2
1000_GenomesGIPC2 
Exome Variant ServerGIPC2
ExAC (Exome Aggregation Consortium)GIPC2 (select the gene name)
Genetic variants : HAPMAP54810
Genomic Variants (DGV)GIPC2 [DGVbeta]
DECIPHERGIPC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGIPC2 
Mutations
ICGC Data PortalGIPC2 
TCGA Data PortalGIPC2 
Broad Tumor PortalGIPC2
OASIS PortalGIPC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGIPC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGIPC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GIPC2
DgiDB (Drug Gene Interaction Database)GIPC2
DoCM (Curated mutations)GIPC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GIPC2 (select a term)
intoGenGIPC2
Cancer3DGIPC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGIPC2
Genetic Testing Registry GIPC2
NextProtQ8TF65 [Medical]
TSGene54810
GENETestsGIPC2
Target ValidationGIPC2
Huge Navigator GIPC2 [HugePedia]
snp3D : Map Gene to Disease54810
BioCentury BCIQGIPC2
ClinGenGIPC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54810
Chemical/Pharm GKB GenePA142671735
Clinical trialGIPC2
Miscellaneous
canSAR (ICR)GIPC2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGIPC2
EVEXGIPC2
GoPubMedGIPC2
iHOPGIPC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:23 CEST 2017

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