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GJA10 (gap junction protein alpha 10)

Identity

Alias_namesgap junction protein, alpha 10, 62kDa
Alias_symbol (synonym)CX62
Other alias
HGNC (Hugo) GJA10
LocusID (NCBI) 84694
Atlas_Id 63793
Location 6q15  [Link to chromosome band 6q15]
Location_base_pair Starts at 89894469 and ends at 89896100 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GJA10   16995
Cards
Entrez_Gene (NCBI)GJA10  84694  gap junction protein alpha 10
AliasesCX62
GeneCards (Weizmann)GJA10
Ensembl hg19 (Hinxton)ENSG00000135355 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135355 [Gene_View]  ENSG00000135355 [Sequence]  chr6:89894469-89896100 [Contig_View]  GJA10 [Vega]
ICGC DataPortalENSG00000135355
TCGA cBioPortalGJA10
AceView (NCBI)GJA10
Genatlas (Paris)GJA10
WikiGenes84694
SOURCE (Princeton)GJA10
Genetics Home Reference (NIH)GJA10
Genomic and cartography
GoldenPath hg38 (UCSC)GJA10  -     chr6:89894469-89896100 +  6q15   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GJA10  -     6q15   [Description]    (hg19-Feb_2009)
EnsemblGJA10 - 6q15 [CytoView hg19]  GJA10 - 6q15 [CytoView hg38]
Mapping of homologs : NCBIGJA10 [Mapview hg19]  GJA10 [Mapview hg38]
OMIM611924   
Gene and transcription
Genbank (Entrez)AF296766 BC140393 BC146474
RefSeq transcript (Entrez)NM_032602
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GJA10
Cluster EST : UnigeneHs.334499 [ NCBI ]
CGAP (NCI)Hs.334499
Alternative Splicing GalleryENSG00000135355
Gene ExpressionGJA10 [ NCBI-GEO ]   GJA10 [ EBI - ARRAY_EXPRESS ]   GJA10 [ SEEK ]   GJA10 [ MEM ]
Gene Expression Viewer (FireBrowse)GJA10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84694
GTEX Portal (Tissue expression)GJA10
Human Protein AtlasENSG00000135355-GJA10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969M2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969M2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969M2
Splice isoforms : SwissVarQ969M2
PhosPhoSitePlusQ969M2
Domaine pattern : Prosite (Expaxy)CONNEXINS_1 (PS00407)    CONNEXINS_2 (PS00408)   
Domains : Interpro (EBI)Connexin    Connexin_CCC    Connexin_CS    Connexin_N   
Domain families : Pfam (Sanger)Connexin (PF00029)   
Domain families : Pfam (NCBI)pfam00029   
Domain families : Smart (EMBL)CNX (SM00037)  Connexin_CCC (SM01089)  
Conserved Domain (NCBI)GJA10
DMDM Disease mutations84694
Blocks (Seattle)GJA10
SuperfamilyQ969M2
Human Protein Atlas [tissue]ENSG00000135355-GJA10 [tissue]
Peptide AtlasQ969M2
HPRD13104
IPIIPI00056430   
Protein Interaction databases
DIP (DOE-UCLA)Q969M2
IntAct (EBI)Q969M2
FunCoupENSG00000135355
BioGRIDGJA10
STRING (EMBL)GJA10
ZODIACGJA10
Ontologies - Pathways
QuickGOQ969M2
Ontology : AmiGOgap junction channel activity  plasma membrane  connexin complex  cell communication  gamete generation  synapse assembly  integral component of membrane  detection of light stimulus involved in visual perception  transmembrane transport  
Ontology : EGO-EBIgap junction channel activity  plasma membrane  connexin complex  cell communication  gamete generation  synapse assembly  integral component of membrane  detection of light stimulus involved in visual perception  transmembrane transport  
Pathways : KEGGCell Communication   
NDEx NetworkGJA10
Atlas of Cancer Signalling NetworkGJA10
Wikipedia pathwaysGJA10
Orthology - Evolution
OrthoDB84694
GeneTree (enSembl)ENSG00000135355
Phylogenetic Trees/Animal Genes : TreeFamGJA10
HOVERGENQ969M2
HOGENOMQ969M2
Homologs : HomoloGeneGJA10
Homology/Alignments : Family Browser (UCSC)GJA10
Gene fusions - Rearrangements
Fusion : QuiverGJA10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGJA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GJA10
dbVarGJA10
ClinVarGJA10
1000_GenomesGJA10 
Exome Variant ServerGJA10
ExAC (Exome Aggregation Consortium)ENSG00000135355
GNOMAD BrowserENSG00000135355
Varsome BrowserGJA10
Genetic variants : HAPMAP84694
Genomic Variants (DGV)GJA10 [DGVbeta]
DECIPHERGJA10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGJA10 
Mutations
ICGC Data PortalGJA10 
TCGA Data PortalGJA10 
Broad Tumor PortalGJA10
OASIS PortalGJA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGJA10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGJA10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GJA10
DgiDB (Drug Gene Interaction Database)GJA10
DoCM (Curated mutations)GJA10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GJA10 (select a term)
intoGenGJA10
Cancer3DGJA10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611924   
Orphanet
DisGeNETGJA10
MedgenGJA10
Genetic Testing Registry GJA10
NextProtQ969M2 [Medical]
TSGene84694
GENETestsGJA10
Target ValidationGJA10
Huge Navigator GJA10 [HugePedia]
snp3D : Map Gene to Disease84694
BioCentury BCIQGJA10
ClinGenGJA10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84694
Chemical/Pharm GKB GenePA164741581
Clinical trialGJA10
Miscellaneous
canSAR (ICR)GJA10 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGJA10
EVEXGJA10
GoPubMedGJA10
iHOPGJA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:47:18 CEST 2018

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