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GJA9 (gap junction protein, alpha 9, 59kDa)

Identity

Alias_namesGJA10
gap junction protein, alpha 10, 59kDa
gap junction protein, alpha 9, 59kDa
Alias_symbol (synonym)CX59
CX58
Other alias
HGNC (Hugo) GJA9
LocusID (NCBI) 81025
Atlas_Id 63796
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 39339739 and ends at 39347298 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
RHBDL2 (1p34.3) / GJA9 (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GJA9   19155
Cards
Entrez_Gene (NCBI)GJA9  81025  gap junction protein, alpha 9, 59kDa
AliasesCX58; CX59; GJA10
GeneCards (Weizmann)GJA9
Ensembl hg19 (Hinxton)ENSG00000131233 [Gene_View]  chr1:39339739-39347298 [Contig_View]  GJA9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000131233 [Gene_View]  chr1:39339739-39347298 [Contig_View]  GJA9 [Vega]
ICGC DataPortalENSG00000131233
TCGA cBioPortalGJA9
AceView (NCBI)GJA9
Genatlas (Paris)GJA9
WikiGenes81025
SOURCE (Princeton)GJA9
Genetics Home Reference (NIH)GJA9
Genomic and cartography
GoldenPath hg19 (UCSC)GJA9  -     chr1:39339739-39347298 -  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GJA9  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblGJA9 - 1p34.3 [CytoView hg19]  GJA9 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBIGJA9 [Mapview hg19]  GJA9 [Mapview hg38]
OMIM611923   
Gene and transcription
Genbank (Entrez)AF271261 AK312811 AL705384 BI463634 BU689816
RefSeq transcript (Entrez)NM_030772
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)GJA9
Cluster EST : UnigeneHs.591506 [ NCBI ]
CGAP (NCI)Hs.591506
Alternative Splicing GalleryENSG00000131233
Gene ExpressionGJA9 [ NCBI-GEO ]   GJA9 [ EBI - ARRAY_EXPRESS ]   GJA9 [ SEEK ]   GJA9 [ MEM ]
Gene Expression Viewer (FireBrowse)GJA9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81025
GTEX Portal (Tissue expression)GJA9
Protein : pattern, domain, 3D structure
UniProt/SwissProtP57773   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP57773  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP57773
Splice isoforms : SwissVarP57773
PhosPhoSitePlusP57773
Domaine pattern : Prosite (Expaxy)CONNEXINS_1 (PS00407)    CONNEXINS_2 (PS00408)   
Domains : Interpro (EBI)Connexin    Connexin_CCC    Connexin_CS    Connexin_N   
Domain families : Pfam (Sanger)Connexin (PF00029)    Connexin_CCC (PF10582)   
Domain families : Pfam (NCBI)pfam00029    pfam10582   
Domain families : Smart (EMBL)CNX (SM00037)  Connexin_CCC (SM01089)  
Conserved Domain (NCBI)GJA9
DMDM Disease mutations81025
Blocks (Seattle)GJA9
SuperfamilyP57773
Human Protein AtlasENSG00000131233
Peptide AtlasP57773
HPRD13578
IPIIPI00028053   IPI00903342   IPI00953031   
Protein Interaction databases
DIP (DOE-UCLA)P57773
IntAct (EBI)P57773
FunCoupENSG00000131233
BioGRIDGJA9
STRING (EMBL)GJA9
ZODIACGJA9
Ontologies - Pathways
QuickGOP57773
Ontology : AmiGOconnexon complex  cell communication  integral component of membrane  
Ontology : EGO-EBIconnexon complex  cell communication  integral component of membrane  
NDEx NetworkGJA9
Atlas of Cancer Signalling NetworkGJA9
Wikipedia pathwaysGJA9
Orthology - Evolution
OrthoDB81025
GeneTree (enSembl)ENSG00000131233
Phylogenetic Trees/Animal Genes : TreeFamGJA9
HOVERGENP57773
HOGENOMP57773
Homologs : HomoloGeneGJA9
Homology/Alignments : Family Browser (UCSC)GJA9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGJA9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GJA9
dbVarGJA9
ClinVarGJA9
1000_GenomesGJA9 
Exome Variant ServerGJA9
ExAC (Exome Aggregation Consortium)GJA9 (select the gene name)
Genetic variants : HAPMAP81025
Genomic Variants (DGV)GJA9 [DGVbeta]
DECIPHER (Syndromes)1:39339739-39347298  ENSG00000131233
CONAN: Copy Number AnalysisGJA9 
Mutations
ICGC Data PortalGJA9 
TCGA Data PortalGJA9 
Broad Tumor PortalGJA9
OASIS PortalGJA9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGJA9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGJA9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GJA9
DgiDB (Drug Gene Interaction Database)GJA9
DoCM (Curated mutations)GJA9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GJA9 (select a term)
intoGenGJA9
Cancer3DGJA9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611923   
Orphanet
MedgenGJA9
Genetic Testing Registry GJA9
NextProtP57773 [Medical]
TSGene81025
GENETestsGJA9
Huge Navigator GJA9 [HugePedia]
snp3D : Map Gene to Disease81025
BioCentury BCIQGJA9
ClinGenGJA9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81025
Chemical/Pharm GKB GenePA164741587
Clinical trialGJA9
Miscellaneous
canSAR (ICR)GJA9 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGJA9
EVEXGJA9
GoPubMedGJA9
iHOPGJA9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:08 CET 2017

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