Atlas of Genetics and Cytogenetics in Oncology and Haematology


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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret jlhuret@AtlasGeneticsOncology.org
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

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GJB6 (gap junction protein, beta 6, 30kDa)

Identity

Other namesCX30
DFNA3
DFNA3B
DFNB1B
ECTD2
ED2
EDH
HED
HED2
HGNC (Hugo) GJB6
LocusID (NCBI) 10804
Location 13q12.11
Location_base_pair Starts at 20796101 and ends at 20806534 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GJB6   4288
Cards
Entrez_Gene (NCBI)GJB6  10804  gap junction protein, beta 6, 30kDa
GeneCards (Weizmann)GJB6
Ensembl hg19 (Hinxton)ENSG00000121742 [Gene_View]  chr13:20796101-20806534 [Contig_View]  GJB6 [Vega]
Ensembl hg38 (Hinxton)ENSG00000121742 [Gene_View]  chr13:20796101-20806534 [Contig_View]  GJB6 [Vega]
ICGC DataPortalENSG00000121742
cBioPortalGJB6
AceView (NCBI)GJB6
Genatlas (Paris)GJB6
WikiGenes10804
SOURCE (Princeton)GJB6
Genomic and cartography
GoldenPath hg19 (UCSC)GJB6  -     chr13:20796101-20806534 -  13q12.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GJB6  -     13q12.11   [Description]    (hg38-Dec_2013)
EnsemblGJB6 - 13q12.11 [CytoView hg19]  GJB6 - 13q12.11 [CytoView hg38]
Mapping of homologs : NCBIGJB6 [Mapview hg19]  GJB6 [Mapview hg38]
OMIM129500   220290   304400   604418   612643   612645   
Gene and transcription
Genbank (Entrez)AK075247 AK289592 AK312352 AY297110 AY789474
RefSeq transcript (Entrez)NM_001110219 NM_001110220 NM_001110221 NM_006783
RefSeq genomic (Entrez)NC_000013 NC_018924 NG_008323 NT_024524 NW_004929388
Consensus coding sequences : CCDS (NCBI)GJB6
Cluster EST : UnigeneHs.511757 [ NCBI ]
CGAP (NCI)Hs.511757
Alternative Splicing : Fast-db (Paris)GSHG0008336
Alternative Splicing GalleryENSG00000121742
Gene ExpressionGJB6 [ NCBI-GEO ]     GJB6 [ SEEK ]   GJB6 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO95452 (Uniprot)
NextProtO95452  [Medical]
With graphics : InterProO95452
Splice isoforms : SwissVarO95452 (Swissvar)
Domaine pattern : Prosite (Expaxy)CONNEXINS_1 (PS00407)    CONNEXINS_2 (PS00408)   
Domains : Interpro (EBI)Connexin    Connexin_CCC    Connexin_CS    Connexin_N   
Related proteins : CluSTrO95452
Domain families : Pfam (Sanger)Connexin (PF00029)    Connexin_CCC (PF10582)   
Domain families : Pfam (NCBI)pfam00029    pfam10582   
Domain families : Smart (EMBL)CNX (SM00037)  Connexin_CCC (SM01089)  
DMDM Disease mutations10804
Blocks (Seattle)O95452
Human Protein AtlasENSG00000121742
Peptide AtlasO95452
HPRD05107
IPIIPI00030763   
Protein Interaction databases
DIP (DOE-UCLA)O95452
IntAct (EBI)O95452
FunCoupENSG00000121742
BioGRIDGJB6
IntegromeDBGJB6
STRING (EMBL)GJB6
Ontologies - Pathways
QuickGOO95452
Ontology : AmiGOcytosol  connexon complex  apoptotic process  cell communication  aging  sensory perception of sound  negative regulation of cell proliferation  integral component of membrane  apical plasma membrane  response to lipopolysaccharide  ear morphogenesis  inner ear development  response to electrical stimulus  cellular response to glucose stimulus  
Ontology : EGO-EBIcytosol  connexon complex  apoptotic process  cell communication  aging  sensory perception of sound  negative regulation of cell proliferation  integral component of membrane  apical plasma membrane  response to lipopolysaccharide  ear morphogenesis  inner ear development  response to electrical stimulus  cellular response to glucose stimulus  
Protein Interaction DatabaseGJB6
DoCM (Curated mutations)GJB6
Wikipedia pathwaysGJB6
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGJB6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GJB6
dbVarGJB6
ClinVarGJB6
1000_GenomesGJB6 
Exome Variant ServerGJB6
SNP (GeneSNP Utah)GJB6
SNP : HGBaseGJB6
Genetic variants : HAPMAPGJB6
Genomic Variants (DGV)GJB6 [DGVbeta]
Mutations
ICGC Data PortalENSG00000121742 
Somatic Mutations in Cancer : COSMICGJB6 
CONAN: Copy Number AnalysisGJB6 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Zhejiang University Center for Genetic and Genomic Medicine (ZJU-CGGM)
LOVD (Leiden Open Variation Database)**PUBLIC** CCHMC Molecular Genetics Laboratory Mutation Database
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)13:20796101-20806534
Mutations and Diseases : HGMDGJB6
OMIM129500    220290    304400    604418    612643    612645   
MedgenGJB6
NextProtO95452 [Medical]
GENETestsGJB6
Disease Genetic AssociationGJB6
Huge Navigator GJB6 [HugePedia]  GJB6 [HugeCancerGEM]
snp3D : Map Gene to Disease10804
DGIdb (Drug Gene Interaction db)GJB6
General knowledge
Homologs : HomoloGeneGJB6
Homology/Alignments : Family Browser (UCSC)GJB6
Phylogenetic Trees/Animal Genes : TreeFamGJB6
Chemical/Protein Interactions : CTD10804
Chemical/Pharm GKB GenePA28699
Clinical trialGJB6
Cancer Resource (Charite)ENSG00000121742
Other databases
Probes
Litterature
PubMed134 Pubmed reference(s) in Entrez
CoreMineGJB6
GoPubMedGJB6
iHOPGJB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:29:37 CET 2015

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For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.