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GJD4 (gap junction protein delta 4)

Identity

Alias_namesgap junction protein, delta 4, 40.1kDa
Alias_symbol (synonym)CX40.1
FLJ90023
Other alias
HGNC (Hugo) GJD4
LocusID (NCBI) 219770
Atlas_Id 63803
Location 10p11.21  [Link to chromosome band 10p11]
Location_base_pair Starts at 35605410 and ends at 35608935 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GJD4   23296
Cards
Entrez_Gene (NCBI)GJD4  219770  gap junction protein delta 4
AliasesCX40.1
GeneCards (Weizmann)GJD4
Ensembl hg19 (Hinxton)ENSG00000177291 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177291 [Gene_View]  chr10:35605410-35608935 [Contig_View]  GJD4 [Vega]
ICGC DataPortalENSG00000177291
TCGA cBioPortalGJD4
AceView (NCBI)GJD4
Genatlas (Paris)GJD4
WikiGenes219770
SOURCE (Princeton)GJD4
Genetics Home Reference (NIH)GJD4
Genomic and cartography
GoldenPath hg38 (UCSC)GJD4  -     chr10:35605410-35608935 +  10p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GJD4  -     10p11.21   [Description]    (hg19-Feb_2009)
EnsemblGJD4 - 10p11.21 [CytoView hg19]  GJD4 - 10p11.21 [CytoView hg38]
Mapping of homologs : NCBIGJD4 [Mapview hg19]  GJD4 [Mapview hg38]
OMIM611922   
Gene and transcription
Genbank (Entrez)AJ414564 AK074504 BC035898 BC156174 BC157014
RefSeq transcript (Entrez)NM_153368
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GJD4
Cluster EST : UnigeneHs.670506 [ NCBI ]
CGAP (NCI)Hs.670506
Alternative Splicing GalleryENSG00000177291
Gene ExpressionGJD4 [ NCBI-GEO ]   GJD4 [ EBI - ARRAY_EXPRESS ]   GJD4 [ SEEK ]   GJD4 [ MEM ]
Gene Expression Viewer (FireBrowse)GJD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219770
GTEX Portal (Tissue expression)GJD4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KN9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KN9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KN9
Splice isoforms : SwissVarQ96KN9
PhosPhoSitePlusQ96KN9
Domaine pattern : Prosite (Expaxy)CONNEXINS_1 (PS00407)    CONNEXINS_2 (PS00408)   
Domains : Interpro (EBI)Connexin    Connexin_CCC    Connexin_CS    Connexin_N   
Domain families : Pfam (Sanger)Connexin (PF00029)   
Domain families : Pfam (NCBI)pfam00029   
Domain families : Smart (EMBL)CNX (SM00037)  Connexin_CCC (SM01089)  
Conserved Domain (NCBI)GJD4
DMDM Disease mutations219770
Blocks (Seattle)GJD4
SuperfamilyQ96KN9
Human Protein AtlasENSG00000177291
Peptide AtlasQ96KN9
HPRD13103
IPIIPI00170993   IPI00216819   
Protein Interaction databases
DIP (DOE-UCLA)Q96KN9
IntAct (EBI)Q96KN9
FunCoupENSG00000177291
BioGRIDGJD4
STRING (EMBL)GJD4
ZODIACGJD4
Ontologies - Pathways
QuickGOQ96KN9
Ontology : AmiGOconnexin complex  cell communication  regulation of satellite cell activation involved in skeletal muscle regeneration  integral component of membrane  
Ontology : EGO-EBIconnexin complex  cell communication  regulation of satellite cell activation involved in skeletal muscle regeneration  integral component of membrane  
NDEx NetworkGJD4
Atlas of Cancer Signalling NetworkGJD4
Wikipedia pathwaysGJD4
Orthology - Evolution
OrthoDB219770
GeneTree (enSembl)ENSG00000177291
Phylogenetic Trees/Animal Genes : TreeFamGJD4
HOVERGENQ96KN9
HOGENOMQ96KN9
Homologs : HomoloGeneGJD4
Homology/Alignments : Family Browser (UCSC)GJD4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGJD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GJD4
dbVarGJD4
ClinVarGJD4
1000_GenomesGJD4 
Exome Variant ServerGJD4
ExAC (Exome Aggregation Consortium)GJD4 (select the gene name)
Genetic variants : HAPMAP219770
Genomic Variants (DGV)GJD4 [DGVbeta]
DECIPHERGJD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGJD4 
Mutations
ICGC Data PortalGJD4 
TCGA Data PortalGJD4 
Broad Tumor PortalGJD4
OASIS PortalGJD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGJD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGJD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GJD4
DgiDB (Drug Gene Interaction Database)GJD4
DoCM (Curated mutations)GJD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GJD4 (select a term)
intoGenGJD4
Cancer3DGJD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611922   
Orphanet
MedgenGJD4
Genetic Testing Registry GJD4
NextProtQ96KN9 [Medical]
TSGene219770
GENETestsGJD4
Target ValidationGJD4
Huge Navigator GJD4 [HugePedia]
snp3D : Map Gene to Disease219770
BioCentury BCIQGJD4
ClinGenGJD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219770
Chemical/Pharm GKB GenePA162389714
Clinical trialGJD4
Miscellaneous
canSAR (ICR)GJD4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGJD4
EVEXGJD4
GoPubMedGJD4
iHOPGJD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:50:40 CEST 2017

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