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GK3P (glycerol kinase 3 pseudogene)

Identity

Alias_namesGKP3
glycerol kinase pseudogene 3
Alias_symbol (synonym)GKTB
Other alias
HGNC (Hugo) GK3P
LocusID (NCBI) 2713
Atlas_Id 63806
Location 4q32.3  [Link to chromosome band 4q32]
Location_base_pair Starts at 165277792 and ends at 165280023 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GK3P   4292
Cards
Entrez_Gene (NCBI)GK3P  2713  glycerol kinase 3 pseudogene
AliasesGKP3; GKTB
GeneCards (Weizmann)GK3P
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr4:165277792-165280023 [Contig_View]  GK3P [Vega]
TCGA cBioPortalGK3P
AceView (NCBI)GK3P
Genatlas (Paris)GK3P
WikiGenes2713
SOURCE (Princeton)GK3P
Genetics Home Reference (NIH)GK3P
Genomic and cartography
GoldenPath hg38 (UCSC)GK3P  -     chr4:165277792-165280023 -  4q32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GK3P  -     4q32.3   [Description]    (hg19-Feb_2009)
EnsemblGK3P - 4q32.3 [CytoView hg19]  GK3P - 4q32.3 [CytoView hg38]
Mapping of homologs : NCBIGK3P [Mapview hg19]  GK3P [Mapview hg38]
OMIM600149   
Gene and transcription
Genbank (Entrez)AK225740 AK292282 BC066960 X78711
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GK3P
Cluster EST : UnigeneHs.654557 [ NCBI ]
CGAP (NCI)Hs.654557
Gene ExpressionGK3P [ NCBI-GEO ]   GK3P [ EBI - ARRAY_EXPRESS ]   GK3P [ SEEK ]   GK3P [ MEM ]
Gene Expression Viewer (FireBrowse)GK3P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2713
GTEX Portal (Tissue expression)GK3P
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ14409   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ14409  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ14409
Splice isoforms : SwissVarQ14409
Catalytic activity : Enzyme2.7.1.30 [ Enzyme-Expasy ]   2.7.1.302.7.1.30 [ IntEnz-EBI ]   2.7.1.30 [ BRENDA ]   2.7.1.30 [ KEGG ]   
PhosPhoSitePlusQ14409
Domaine pattern : Prosite (Expaxy)FGGY_KINASES_1 (PS00933)    FGGY_KINASES_2 (PS00445)   
Domains : Interpro (EBI)Carb_kinase_FGGY    Carb_kinase_FGGY_C    Carb_kinase_FGGY_CS    Carb_kinase_FGGY_N    Glycerol_kin   
Domain families : Pfam (Sanger)FGGY_C (PF02782)    FGGY_N (PF00370)   
Domain families : Pfam (NCBI)pfam02782    pfam00370   
Conserved Domain (NCBI)GK3P
DMDM Disease mutations2713
Blocks (Seattle)GK3P
SuperfamilyQ14409
Peptide AtlasQ14409
IPIIPI00027424   IPI00216066   IPI00216067   IPI00030811   IPI00908673   IPI00941334   IPI00645091   IPI00419934   IPI00645564   IPI00643656   IPI00945261   IPI00946138   IPI00945084   IPI00945417   IPI00944912   
Protein Interaction databases
DIP (DOE-UCLA)Q14409
IntAct (EBI)Q14409
BioGRIDGK3P
STRING (EMBL)GK3P
ZODIACGK3P
Ontologies - Pathways
QuickGOQ14409
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkGK3P
Atlas of Cancer Signalling NetworkGK3P
Wikipedia pathwaysGK3P
Orthology - Evolution
OrthoDB2713
Phylogenetic Trees/Animal Genes : TreeFamGK3P
HOVERGENQ14409
HOGENOMQ14409
Homologs : HomoloGeneGK3P
Homology/Alignments : Family Browser (UCSC)GK3P
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGK3P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GK3P
dbVarGK3P
ClinVarGK3P
1000_GenomesGK3P 
Exome Variant ServerGK3P
ExAC (Exome Aggregation Consortium)GK3P (select the gene name)
Genetic variants : HAPMAP2713
Genomic Variants (DGV)GK3P [DGVbeta]
DECIPHERGK3P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGK3P 
Mutations
ICGC Data PortalGK3P 
TCGA Data PortalGK3P 
Broad Tumor PortalGK3P
OASIS PortalGK3P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDGK3P
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GK3P
DgiDB (Drug Gene Interaction Database)GK3P
DoCM (Curated mutations)GK3P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GK3P (select a term)
intoGenGK3P
Cancer3DGK3P(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600149   
Orphanet
MedgenGK3P
Genetic Testing Registry GK3P
NextProtQ14409 [Medical]
TSGene2713
GENETestsGK3P
Target ValidationGK3P
Huge Navigator GK3P [HugePedia]
snp3D : Map Gene to Disease2713
BioCentury BCIQGK3P
ClinGenGK3P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2713
Chemical/Pharm GKB GenePA28703
Clinical trialGK3P
Miscellaneous
canSAR (ICR)GK3P (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGK3P
EVEXGK3P
GoPubMedGK3P
iHOPGK3P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:25 CEST 2017

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