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GK5 (glycerol kinase 5 (putative))

Identity

Alias_symbol (synonym)MGC40579
Other alias-
HGNC (Hugo) GK5
LocusID (NCBI) 256356
Atlas_Id 55681
Location 3q23  [Link to chromosome band 3q23]
Location_base_pair Starts at 141876369 and ends at 141944449 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDC6 (17q21.2) / GK5 (3q23)GK5 (3q23) / MBNL1 (3q25.1)GK5 (3q23) / PAQR9 (3q23)
TFDP2 (3q23) / GK5 (3q23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GK5   28635
Cards
Entrez_Gene (NCBI)GK5  256356  glycerol kinase 5 (putative)
Aliases
GeneCards (Weizmann)GK5
Ensembl hg19 (Hinxton)ENSG00000175066 [Gene_View]  chr3:141876369-141944449 [Contig_View]  GK5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000175066 [Gene_View]  chr3:141876369-141944449 [Contig_View]  GK5 [Vega]
ICGC DataPortalENSG00000175066
TCGA cBioPortalGK5
AceView (NCBI)GK5
Genatlas (Paris)GK5
WikiGenes256356
SOURCE (Princeton)GK5
Genetics Home Reference (NIH)GK5
Genomic and cartography
GoldenPath hg19 (UCSC)GK5  -     chr3:141876369-141944449 -  3q23   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GK5  -     3q23   [Description]    (hg38-Dec_2013)
EnsemblGK5 - 3q23 [CytoView hg19]  GK5 - 3q23 [CytoView hg38]
Mapping of homologs : NCBIGK5 [Mapview hg19]  GK5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090901 AK127641 AK130469 AK310761 AK313792
RefSeq transcript (Entrez)NM_001039547 NM_152776
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)GK5
Cluster EST : UnigeneHs.745523 [ NCBI ]
CGAP (NCI)Hs.745523
Alternative Splicing GalleryENSG00000175066
Gene ExpressionGK5 [ NCBI-GEO ]   GK5 [ EBI - ARRAY_EXPRESS ]   GK5 [ SEEK ]   GK5 [ MEM ]
Gene Expression Viewer (FireBrowse)GK5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256356
GTEX Portal (Tissue expression)GK5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZS86   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZS86  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZS86
Splice isoforms : SwissVarQ6ZS86
Catalytic activity : Enzyme2.7.1.30 [ Enzyme-Expasy ]   2.7.1.302.7.1.30 [ IntEnz-EBI ]   2.7.1.30 [ BRENDA ]   2.7.1.30 [ KEGG ]   
PhosPhoSitePlusQ6ZS86
Domaine pattern : Prosite (Expaxy)FGGY_KINASES_2 (PS00445)   
Domains : Interpro (EBI)Carb_kinase_FGGY    Carb_kinase_FGGY_C    Carb_kinase_FGGY_CS    Carb_kinase_FGGY_N   
Domain families : Pfam (Sanger)FGGY_C (PF02782)    FGGY_N (PF00370)   
Domain families : Pfam (NCBI)pfam02782    pfam00370   
Conserved Domain (NCBI)GK5
DMDM Disease mutations256356
Blocks (Seattle)GK5
SuperfamilyQ6ZS86
Human Protein AtlasENSG00000175066
Peptide AtlasQ6ZS86
HPRD14612
IPIIPI00791183   IPI00744122   IPI00166847   IPI00946992   IPI00946568   IPI00946271   IPI00947320   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZS86
IntAct (EBI)Q6ZS86
FunCoupENSG00000175066
BioGRIDGK5
STRING (EMBL)GK5
ZODIACGK5
Ontologies - Pathways
QuickGOQ6ZS86
Ontology : AmiGOglycerol kinase activity  ATP binding  cytoplasm  phosphorylation  phosphotransferase activity, alcohol group as acceptor  glycerol catabolic process  
Ontology : EGO-EBIglycerol kinase activity  ATP binding  cytoplasm  phosphorylation  phosphotransferase activity, alcohol group as acceptor  glycerol catabolic process  
NDEx NetworkGK5
Atlas of Cancer Signalling NetworkGK5
Wikipedia pathwaysGK5
Orthology - Evolution
OrthoDB256356
GeneTree (enSembl)ENSG00000175066
Phylogenetic Trees/Animal Genes : TreeFamGK5
HOVERGENQ6ZS86
HOGENOMQ6ZS86
Homologs : HomoloGeneGK5
Homology/Alignments : Family Browser (UCSC)GK5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGK5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GK5
dbVarGK5
ClinVarGK5
1000_GenomesGK5 
Exome Variant ServerGK5
ExAC (Exome Aggregation Consortium)GK5 (select the gene name)
Genetic variants : HAPMAP256356
Genomic Variants (DGV)GK5 [DGVbeta]
DECIPHER (Syndromes)3:141876369-141944449  ENSG00000175066
CONAN: Copy Number AnalysisGK5 
Mutations
ICGC Data PortalGK5 
TCGA Data PortalGK5 
Broad Tumor PortalGK5
OASIS PortalGK5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGK5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGK5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GK5
DgiDB (Drug Gene Interaction Database)GK5
DoCM (Curated mutations)GK5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GK5 (select a term)
intoGenGK5
Cancer3DGK5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGK5
Genetic Testing Registry GK5
NextProtQ6ZS86 [Medical]
TSGene256356
GENETestsGK5
Huge Navigator GK5 [HugePedia]
snp3D : Map Gene to Disease256356
BioCentury BCIQGK5
ClinGenGK5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256356
Chemical/Pharm GKB GenePA162389723
Clinical trialGK5
Miscellaneous
canSAR (ICR)GK5 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGK5
EVEXGK5
GoPubMedGK5
iHOPGK5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:07:30 CET 2017

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