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GKAP1 (G kinase anchoring protein 1)

Identity

Alias_symbol (synonym)GKAP42
FKSG21
Other alias
HGNC (Hugo) GKAP1
LocusID (NCBI) 80318
Atlas_Id 63808
Location 9q21.32  [Link to chromosome band 9q21]
Location_base_pair Starts at 83739421 and ends at 83817837 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GKAP1 (9q21.32) / KIF27 (9q21.32)GKAP1 (9q21.32) / MECP2 (Xq28)UBQLN1 (9q21.32) / GKAP1 (9q21.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GKAP1   17496
Cards
Entrez_Gene (NCBI)GKAP1  80318  G kinase anchoring protein 1
AliasesFKSG21; GKAP42
GeneCards (Weizmann)GKAP1
Ensembl hg19 (Hinxton)ENSG00000165113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165113 [Gene_View]  chr9:83739421-83817837 [Contig_View]  GKAP1 [Vega]
ICGC DataPortalENSG00000165113
TCGA cBioPortalGKAP1
AceView (NCBI)GKAP1
Genatlas (Paris)GKAP1
WikiGenes80318
SOURCE (Princeton)GKAP1
Genetics Home Reference (NIH)GKAP1
Genomic and cartography
GoldenPath hg38 (UCSC)GKAP1  -     chr9:83739421-83817837 -  9q21.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GKAP1  -     9q21.32   [Description]    (hg19-Feb_2009)
EnsemblGKAP1 - 9q21.32 [CytoView hg19]  GKAP1 - 9q21.32 [CytoView hg38]
Mapping of homologs : NCBIGKAP1 [Mapview hg19]  GKAP1 [Mapview hg38]
OMIM611356   
Gene and transcription
Genbank (Entrez)AB033131 AB033132 AF319476 AJ420456 AK026487
RefSeq transcript (Entrez)NM_001135953 NM_025211
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GKAP1
Cluster EST : UnigeneHs.522255 [ NCBI ]
CGAP (NCI)Hs.522255
Alternative Splicing GalleryENSG00000165113
Gene ExpressionGKAP1 [ NCBI-GEO ]   GKAP1 [ EBI - ARRAY_EXPRESS ]   GKAP1 [ SEEK ]   GKAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)GKAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80318
GTEX Portal (Tissue expression)GKAP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5VSY0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5VSY0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5VSY0
Splice isoforms : SwissVarQ5VSY0
PhosPhoSitePlusQ5VSY0
Domains : Interpro (EBI)GKAP1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GKAP1
DMDM Disease mutations80318
Blocks (Seattle)GKAP1
SuperfamilyQ5VSY0
Human Protein AtlasENSG00000165113
Peptide AtlasQ5VSY0
HPRD17042
IPIIPI00107366   IPI00328143   IPI00946111   IPI00945542   
Protein Interaction databases
DIP (DOE-UCLA)Q5VSY0
IntAct (EBI)Q5VSY0
FunCoupENSG00000165113
BioGRIDGKAP1
STRING (EMBL)GKAP1
ZODIACGKAP1
Ontologies - Pathways
QuickGOQ5VSY0
Ontology : AmiGOprotein binding  Golgi apparatus  signal transduction  identical protein binding  
Ontology : EGO-EBIprotein binding  Golgi apparatus  signal transduction  identical protein binding  
NDEx NetworkGKAP1
Atlas of Cancer Signalling NetworkGKAP1
Wikipedia pathwaysGKAP1
Orthology - Evolution
OrthoDB80318
GeneTree (enSembl)ENSG00000165113
Phylogenetic Trees/Animal Genes : TreeFamGKAP1
HOVERGENQ5VSY0
HOGENOMQ5VSY0
Homologs : HomoloGeneGKAP1
Homology/Alignments : Family Browser (UCSC)GKAP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGKAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GKAP1
dbVarGKAP1
ClinVarGKAP1
1000_GenomesGKAP1 
Exome Variant ServerGKAP1
ExAC (Exome Aggregation Consortium)GKAP1 (select the gene name)
Genetic variants : HAPMAP80318
Genomic Variants (DGV)GKAP1 [DGVbeta]
DECIPHERGKAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGKAP1 
Mutations
ICGC Data PortalGKAP1 
TCGA Data PortalGKAP1 
Broad Tumor PortalGKAP1
OASIS PortalGKAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGKAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGKAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GKAP1
DgiDB (Drug Gene Interaction Database)GKAP1
DoCM (Curated mutations)GKAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GKAP1 (select a term)
intoGenGKAP1
Cancer3DGKAP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611356   
Orphanet
MedgenGKAP1
Genetic Testing Registry GKAP1
NextProtQ5VSY0 [Medical]
TSGene80318
GENETestsGKAP1
Target ValidationGKAP1
Huge Navigator GKAP1 [HugePedia]
snp3D : Map Gene to Disease80318
BioCentury BCIQGKAP1
ClinGenGKAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80318
Chemical/Pharm GKB GenePA134880503
Clinical trialGKAP1
Miscellaneous
canSAR (ICR)GKAP1 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGKAP1
EVEXGKAP1
GoPubMedGKAP1
iHOPGKAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:25 CEST 2017

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