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GKN1 (gastrokine 1)

Identity

Alias_symbol (synonym)AMP18
CA11
BRICD1
Other aliasFOV
foveolin
HGNC (Hugo) GKN1
LocusID (NCBI) 56287
Atlas_Id 40717
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 69201705 and ends at 69208112 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
TBC1D22A (22q13.31) / GKN1 (2p13.3)TBC1D22A 22q13.31 / GKN1 2p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GKN1   23217
Cards
Entrez_Gene (NCBI)GKN1  56287  gastrokine 1
AliasesAMP18; BRICD1; CA11; FOV; 
foveolin
GeneCards (Weizmann)GKN1
Ensembl hg19 (Hinxton)ENSG00000169605 [Gene_View]  chr2:69201705-69208112 [Contig_View]  GKN1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000169605 [Gene_View]  chr2:69201705-69208112 [Contig_View]  GKN1 [Vega]
ICGC DataPortalENSG00000169605
TCGA cBioPortalGKN1
AceView (NCBI)GKN1
Genatlas (Paris)GKN1
WikiGenes56287
SOURCE (Princeton)GKN1
Genetics Home Reference (NIH)GKN1
Genomic and cartography
GoldenPath hg19 (UCSC)GKN1  -     chr2:69201705-69208112 +  2p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GKN1  -     2p13.3   [Description]    (hg38-Dec_2013)
EnsemblGKN1 - 2p13.3 [CytoView hg19]  GKN1 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBIGKN1 [Mapview hg19]  GKN1 [Mapview hg38]
OMIM606402   
Gene and transcription
Genbank (Entrez)AB039886 AJ966789 AK098489 AL833013 AY139184
RefSeq transcript (Entrez)NM_019617
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)GKN1
Cluster EST : UnigeneHs.69319 [ NCBI ]
CGAP (NCI)Hs.69319
Alternative Splicing GalleryENSG00000169605
Gene ExpressionGKN1 [ NCBI-GEO ]   GKN1 [ EBI - ARRAY_EXPRESS ]   GKN1 [ SEEK ]   GKN1 [ MEM ]
Gene Expression Viewer (FireBrowse)GKN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56287
GTEX Portal (Tissue expression)GKN1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NS71   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NS71  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NS71
Splice isoforms : SwissVarQ9NS71
PhosPhoSitePlusQ9NS71
Domaine pattern : Prosite (Expaxy)BRICHOS (PS50869)   
Domains : Interpro (EBI)BRICHOS_dom   
Domain families : Pfam (Sanger)BRICHOS (PF04089)   
Domain families : Pfam (NCBI)pfam04089   
Domain families : Smart (EMBL)BRICHOS (SM01039)  
Conserved Domain (NCBI)GKN1
DMDM Disease mutations56287
Blocks (Seattle)GKN1
SuperfamilyQ9NS71
Human Protein AtlasENSG00000169605
Peptide AtlasQ9NS71
HPRD16217
IPIIPI00749381   
Protein Interaction databases
DIP (DOE-UCLA)Q9NS71
IntAct (EBI)Q9NS71
FunCoupENSG00000169605
BioGRIDGKN1
STRING (EMBL)GKN1
ZODIACGKN1
Ontologies - Pathways
QuickGOQ9NS71
Ontology : AmiGOmolecular_function  cellular_component  extracellular space  digestion  regulation of cell proliferation  positive regulation of cell division  
Ontology : EGO-EBImolecular_function  cellular_component  extracellular space  digestion  regulation of cell proliferation  positive regulation of cell division  
NDEx NetworkGKN1
Atlas of Cancer Signalling NetworkGKN1
Wikipedia pathwaysGKN1
Orthology - Evolution
OrthoDB56287
GeneTree (enSembl)ENSG00000169605
Phylogenetic Trees/Animal Genes : TreeFamGKN1
HOVERGENQ9NS71
HOGENOMQ9NS71
Homologs : HomoloGeneGKN1
Homology/Alignments : Family Browser (UCSC)GKN1
Gene fusions - Rearrangements
Fusion : MitelmanTBC1D22A/GKN1 [22q13.31/2p13.3]  [t(2;22)(p13;q13)]  
Fusion: TCGATBC1D22A 22q13.31 GKN1 2p13.3 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGKN1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GKN1
dbVarGKN1
ClinVarGKN1
1000_GenomesGKN1 
Exome Variant ServerGKN1
ExAC (Exome Aggregation Consortium)GKN1 (select the gene name)
Genetic variants : HAPMAP56287
Genomic Variants (DGV)GKN1 [DGVbeta]
DECIPHER (Syndromes)2:69201705-69208112  ENSG00000169605
CONAN: Copy Number AnalysisGKN1 
Mutations
ICGC Data PortalGKN1 
TCGA Data PortalGKN1 
Broad Tumor PortalGKN1
OASIS PortalGKN1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGKN1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGKN1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GKN1
DgiDB (Drug Gene Interaction Database)GKN1
DoCM (Curated mutations)GKN1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GKN1 (select a term)
intoGenGKN1
Cancer3DGKN1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM606402   
Orphanet
MedgenGKN1
Genetic Testing Registry GKN1
NextProtQ9NS71 [Medical]
TSGene56287
GENETestsGKN1
Huge Navigator GKN1 [HugePedia]
snp3D : Map Gene to Disease56287
BioCentury BCIQGKN1
ClinGenGKN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56287
Chemical/Pharm GKB GenePA134898851
Clinical trialGKN1
Miscellaneous
canSAR (ICR)GKN1 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGKN1
EVEXGKN1
GoPubMedGKN1
iHOPGKN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 13:07:30 CET 2017

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