Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GKN2 (gastrokine 2)

Identity

Alias_symbol (synonym)TFIZ1
PRO813
VLTI465
blottin
GDDR
BRICD1B
Other alias
HGNC (Hugo) GKN2
LocusID (NCBI) 200504
Atlas_Id 40698
Location 2p13.3  [Link to chromosome band 2p13]
Location_base_pair Starts at 68945232 and ends at 68952970 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GKN2   24588
Cards
Entrez_Gene (NCBI)GKN2  200504  gastrokine 2
AliasesBRICD1B; GDDR; PRO813; TFIZ1; 
VLTI465
GeneCards (Weizmann)GKN2
Ensembl hg19 (Hinxton)ENSG00000183607 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183607 [Gene_View]  chr2:68945232-68952970 [Contig_View]  GKN2 [Vega]
ICGC DataPortalENSG00000183607
TCGA cBioPortalGKN2
AceView (NCBI)GKN2
Genatlas (Paris)GKN2
WikiGenes200504
SOURCE (Princeton)GKN2
Genetics Home Reference (NIH)GKN2
Genomic and cartography
GoldenPath hg38 (UCSC)GKN2  -     chr2:68945232-68952970 -  2p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GKN2  -     2p13.3   [Description]    (hg19-Feb_2009)
EnsemblGKN2 - 2p13.3 [CytoView hg19]  GKN2 - 2p13.3 [CytoView hg38]
Mapping of homologs : NCBIGKN2 [Mapview hg19]  GKN2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF494509 AJ966788 AY358664 AY943908 BC110809
RefSeq transcript (Entrez)NM_182536
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GKN2
Cluster EST : UnigeneHs.16757 [ NCBI ]
CGAP (NCI)Hs.16757
Alternative Splicing GalleryENSG00000183607
Gene ExpressionGKN2 [ NCBI-GEO ]   GKN2 [ EBI - ARRAY_EXPRESS ]   GKN2 [ SEEK ]   GKN2 [ MEM ]
Gene Expression Viewer (FireBrowse)GKN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200504
GTEX Portal (Tissue expression)GKN2
Human Protein AtlasENSG00000183607-GKN2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86XP6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86XP6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86XP6
Splice isoforms : SwissVarQ86XP6
PhosPhoSitePlusQ86XP6
Domaine pattern : Prosite (Expaxy)BRICHOS (PS50869)   
Domains : Interpro (EBI)BRICHOS_dom   
Domain families : Pfam (Sanger)BRICHOS (PF04089)   
Domain families : Pfam (NCBI)pfam04089   
Domain families : Smart (EMBL)BRICHOS (SM01039)  
Conserved Domain (NCBI)GKN2
DMDM Disease mutations200504
Blocks (Seattle)GKN2
SuperfamilyQ86XP6
Human Protein Atlas [tissue]ENSG00000183607-GKN2 [tissue]
Peptide AtlasQ86XP6
HPRD17034
IPIIPI00329266   IPI00985010   
Protein Interaction databases
DIP (DOE-UCLA)Q86XP6
IntAct (EBI)Q86XP6
FunCoupENSG00000183607
BioGRIDGKN2
STRING (EMBL)GKN2
ZODIACGKN2
Ontologies - Pathways
QuickGOQ86XP6
Ontology : AmiGOextracellular space  regulation of cell proliferation  basal part of cell  
Ontology : EGO-EBIextracellular space  regulation of cell proliferation  basal part of cell  
NDEx NetworkGKN2
Atlas of Cancer Signalling NetworkGKN2
Wikipedia pathwaysGKN2
Orthology - Evolution
OrthoDB200504
GeneTree (enSembl)ENSG00000183607
Phylogenetic Trees/Animal Genes : TreeFamGKN2
HOVERGENQ86XP6
HOGENOMQ86XP6
Homologs : HomoloGeneGKN2
Homology/Alignments : Family Browser (UCSC)GKN2
Gene fusions - Rearrangements
Tumor Fusion PortalGKN2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGKN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GKN2
dbVarGKN2
ClinVarGKN2
1000_GenomesGKN2 
Exome Variant ServerGKN2
ExAC (Exome Aggregation Consortium)ENSG00000183607
GNOMAD BrowserENSG00000183607
Genetic variants : HAPMAP200504
Genomic Variants (DGV)GKN2 [DGVbeta]
DECIPHERGKN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGKN2 
Mutations
ICGC Data PortalGKN2 
TCGA Data PortalGKN2 
Broad Tumor PortalGKN2
OASIS PortalGKN2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGKN2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGKN2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GKN2
DgiDB (Drug Gene Interaction Database)GKN2
DoCM (Curated mutations)GKN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GKN2 (select a term)
intoGenGKN2
Cancer3DGKN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGKN2
MedgenGKN2
Genetic Testing Registry GKN2
NextProtQ86XP6 [Medical]
TSGene200504
GENETestsGKN2
Target ValidationGKN2
Huge Navigator GKN2 [HugePedia]
snp3D : Map Gene to Disease200504
BioCentury BCIQGKN2
ClinGenGKN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200504
Chemical/Pharm GKB GenePA162389760
Clinical trialGKN2
Miscellaneous
canSAR (ICR)GKN2 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGKN2
EVEXGKN2
GoPubMedGKN2
iHOPGKN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:14:40 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.