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GLB1L3 (galactosidase beta 1 like 3)

Identity

Alias_namesgalactosidase, beta 1-like 3
galactosidase beta 1-like 3
Alias_symbol (synonym)FLJ90231
Other alias-
HGNC (Hugo) GLB1L3
LocusID (NCBI) 112937
Atlas_Id 63812
Location 11q25  [Link to chromosome band 11q25]
Location_base_pair Starts at 134276381 and ends at 134319564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACAD8 (11q25) / GLB1L3 (11q25)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GLB1L3   25147
Cards
Entrez_Gene (NCBI)GLB1L3  112937  galactosidase beta 1 like 3
Aliases
GeneCards (Weizmann)GLB1L3
Ensembl hg19 (Hinxton)ENSG00000166105 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166105 [Gene_View]  ENSG00000166105 [Sequence]  chr11:134276381-134319564 [Contig_View]  GLB1L3 [Vega]
ICGC DataPortalENSG00000166105
TCGA cBioPortalGLB1L3
AceView (NCBI)GLB1L3
Genatlas (Paris)GLB1L3
WikiGenes112937
SOURCE (Princeton)GLB1L3
Genetics Home Reference (NIH)GLB1L3
Genomic and cartography
GoldenPath hg38 (UCSC)GLB1L3  -     chr11:134276381-134319564 +  11q25   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLB1L3  -     11q25   [Description]    (hg19-Feb_2009)
EnsemblGLB1L3 - 11q25 [CytoView hg19]  GLB1L3 - 11q25 [CytoView hg38]
Mapping of homologs : NCBIGLB1L3 [Mapview hg19]  GLB1L3 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK074712 AK124514 BC011001 BC040605 BC063875
RefSeq transcript (Entrez)NM_001080407 NM_138416
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLB1L3
Cluster EST : UnigeneHs.721382 [ NCBI ]
CGAP (NCI)Hs.721382
Alternative Splicing GalleryENSG00000166105
Gene ExpressionGLB1L3 [ NCBI-GEO ]   GLB1L3 [ EBI - ARRAY_EXPRESS ]   GLB1L3 [ SEEK ]   GLB1L3 [ MEM ]
Gene Expression Viewer (FireBrowse)GLB1L3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)112937
GTEX Portal (Tissue expression)GLB1L3
Human Protein AtlasENSG00000166105-GLB1L3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCI6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCI6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCI6
Splice isoforms : SwissVarQ8NCI6
PhosPhoSitePlusQ8NCI6
Domains : Interpro (EBI)B-gal_1-like    Galactose-bd-like    Gly_Hdrlase_35_cat    Glyco_hydro_catalytic_dom    Glycoside_Hdrlase_35    Glycoside_hydrolase_SF   
Domain families : Pfam (Sanger)Glyco_hydro_35 (PF01301)   
Domain families : Pfam (NCBI)pfam01301   
Conserved Domain (NCBI)GLB1L3
DMDM Disease mutations112937
Blocks (Seattle)GLB1L3
SuperfamilyQ8NCI6
Human Protein Atlas [tissue]ENSG00000166105-GLB1L3 [tissue]
Peptide AtlasQ8NCI6
HPRD08814
IPIIPI00783341   IPI00061988   IPI00854818   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCI6
IntAct (EBI)Q8NCI6
FunCoupENSG00000166105
BioGRIDGLB1L3
STRING (EMBL)GLB1L3
ZODIACGLB1L3
Ontologies - Pathways
QuickGOQ8NCI6
Ontology : AmiGObeta-galactosidase activity  vacuole  carbohydrate metabolic process  
Ontology : EGO-EBIbeta-galactosidase activity  vacuole  carbohydrate metabolic process  
NDEx NetworkGLB1L3
Atlas of Cancer Signalling NetworkGLB1L3
Wikipedia pathwaysGLB1L3
Orthology - Evolution
OrthoDB112937
GeneTree (enSembl)ENSG00000166105
Phylogenetic Trees/Animal Genes : TreeFamGLB1L3
HOVERGENQ8NCI6
HOGENOMQ8NCI6
Homologs : HomoloGeneGLB1L3
Homology/Alignments : Family Browser (UCSC)GLB1L3
Gene fusions - Rearrangements
Fusion : QuiverGLB1L3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLB1L3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLB1L3
dbVarGLB1L3
ClinVarGLB1L3
1000_GenomesGLB1L3 
Exome Variant ServerGLB1L3
ExAC (Exome Aggregation Consortium)ENSG00000166105
GNOMAD BrowserENSG00000166105
Varsome BrowserGLB1L3
Genetic variants : HAPMAP112937
Genomic Variants (DGV)GLB1L3 [DGVbeta]
DECIPHERGLB1L3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLB1L3 
Mutations
ICGC Data PortalGLB1L3 
TCGA Data PortalGLB1L3 
Broad Tumor PortalGLB1L3
OASIS PortalGLB1L3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLB1L3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLB1L3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLB1L3
DgiDB (Drug Gene Interaction Database)GLB1L3
DoCM (Curated mutations)GLB1L3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLB1L3 (select a term)
intoGenGLB1L3
Cancer3DGLB1L3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETGLB1L3
MedgenGLB1L3
Genetic Testing Registry GLB1L3
NextProtQ8NCI6 [Medical]
TSGene112937
GENETestsGLB1L3
Target ValidationGLB1L3
Huge Navigator GLB1L3 [HugePedia]
snp3D : Map Gene to Disease112937
BioCentury BCIQGLB1L3
ClinGenGLB1L3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD112937
Chemical/Pharm GKB GenePA145148764
Clinical trialGLB1L3
Miscellaneous
canSAR (ICR)GLB1L3 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLB1L3
EVEXGLB1L3
GoPubMedGLB1L3
iHOPGLB1L3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 13:47:21 CEST 2018
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