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GLCCI1 (glucocorticoid induced 1)

Identity

Alias (NCBI)FAM117C
GCTR
GIG18
TSSN1
HGNC (Hugo) GLCCI1
HGNC Alias symbGIG18
FAM117C
TSSN1
HGNC Previous nameglucocorticoid induced transcript 1
LocusID (NCBI) 113263
Atlas_Id 63813
Location 7p21.3  [Link to chromosome band 7p21]
Location_base_pair Starts at 7968796 and ends at 8089079 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GLCCI1 (7p21.3) / PARP4 (13q12.12)LOC729852 () / GLCCI1 (7p21.3)USP42 (7p22.1) / GLCCI1 (7p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GLCCI1   18713
Cards
Entrez_Gene (NCBI)GLCCI1    glucocorticoid induced 1
AliasesFAM117C; GCTR; GIG18; TSSN1
GeneCards (Weizmann)GLCCI1
Ensembl hg19 (Hinxton)ENSG00000106415 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106415 [Gene_View]  ENSG00000106415 [Sequence]  chr7:7968796-8089079 [Contig_View]  GLCCI1 [Vega]
ICGC DataPortalENSG00000106415
TCGA cBioPortalGLCCI1
AceView (NCBI)GLCCI1
Genatlas (Paris)GLCCI1
SOURCE (Princeton)GLCCI1
Genetics Home Reference (NIH)GLCCI1
Genomic and cartography
GoldenPath hg38 (UCSC)GLCCI1  -     chr7:7968796-8089079 +  7p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLCCI1  -     7p21.3   [Description]    (hg19-Feb_2009)
GoldenPathGLCCI1 - 7p21.3 [CytoView hg19]  GLCCI1 - 7p21.3 [CytoView hg38]
ImmunoBaseENSG00000106415
Genome Data Viewer NCBIGLCCI1 [Mapview hg19]  
OMIM614283   614400   
Gene and transcription
Genbank (Entrez)AK055741 AK093655 AK126731 AL832860 AL833694
RefSeq transcript (Entrez)NM_138426
Consensus coding sequences : CCDS (NCBI)GLCCI1
Gene ExpressionGLCCI1 [ NCBI-GEO ]   GLCCI1 [ EBI - ARRAY_EXPRESS ]   GLCCI1 [ SEEK ]   GLCCI1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLCCI1 [ Firebrowse - Broad ]
GenevisibleExpression of GLCCI1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113263
GTEX Portal (Tissue expression)GLCCI1
Human Protein AtlasENSG00000106415-GLCCI1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VQ1
PhosPhoSitePlusQ86VQ1
Domains : Interpro (EBI)Glcci1    Glcci1/FAM117   
Domain families : Pfam (Sanger)FAM117 (PF15388)   
Domain families : Pfam (NCBI)pfam15388   
Conserved Domain (NCBI)GLCCI1
SuperfamilyQ86VQ1
AlphaFold pdb e-kbQ86VQ1   
Human Protein Atlas [tissue]ENSG00000106415-GLCCI1 [tissue]
HPRD17043
Protein Interaction databases
DIP (DOE-UCLA)Q86VQ1
IntAct (EBI)Q86VQ1
BioGRIDGLCCI1
STRING (EMBL)GLCCI1
ZODIACGLCCI1
Ontologies - Pathways
QuickGOQ86VQ1
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkGLCCI1
Atlas of Cancer Signalling NetworkGLCCI1
Wikipedia pathwaysGLCCI1
Orthology - Evolution
OrthoDB113263
GeneTree (enSembl)ENSG00000106415
Phylogenetic Trees/Animal Genes : TreeFamGLCCI1
Homologs : HomoloGeneGLCCI1
Homology/Alignments : Family Browser (UCSC)GLCCI1
Gene fusions - Rearrangements
Fusion : QuiverGLCCI1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLCCI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLCCI1
dbVarGLCCI1
ClinVarGLCCI1
MonarchGLCCI1
1000_GenomesGLCCI1 
Exome Variant ServerGLCCI1
GNOMAD BrowserENSG00000106415
Varsome BrowserGLCCI1
ACMGGLCCI1 variants
VarityQ86VQ1
Genomic Variants (DGV)GLCCI1 [DGVbeta]
DECIPHERGLCCI1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLCCI1 
Mutations
ICGC Data PortalGLCCI1 
TCGA Data PortalGLCCI1 
Broad Tumor PortalGLCCI1
OASIS PortalGLCCI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLCCI1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGLCCI1
Mutations and Diseases : HGMDGLCCI1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGLCCI1
DgiDB (Drug Gene Interaction Database)GLCCI1
DoCM (Curated mutations)GLCCI1
CIViC (Clinical Interpretations of Variants in Cancer)GLCCI1
Cancer3DGLCCI1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614283    614400   
Orphanet
DisGeNETGLCCI1
MedgenGLCCI1
Genetic Testing Registry GLCCI1
NextProtQ86VQ1 [Medical]
GENETestsGLCCI1
Target ValidationGLCCI1
Huge Navigator GLCCI1 [HugePedia]
ClinGenGLCCI1
Clinical trials, drugs, therapy
MyCancerGenomeGLCCI1
Protein Interactions : CTDGLCCI1
Pharm GKB GenePA38657
PharosQ86VQ1
Clinical trialGLCCI1
Miscellaneous
canSAR (ICR)GLCCI1
HarmonizomeGLCCI1
DataMed IndexGLCCI1
Probes
Litterature
PubMed43 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGLCCI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:51:31 CEST 2021

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