Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GLCCI1 (glucocorticoid induced 1)

Identity

Alias_namesglucocorticoid induced transcript 1
Alias_symbol (synonym)GIG18
FAM117C
TSSN1
Other aliasGCTR
HGNC (Hugo) GLCCI1
LocusID (NCBI) 113263
Atlas_Id 63813
Location 7p21.3  [Link to chromosome band 7p21]
Location_base_pair Starts at 8008374 and ends at 8128709 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GLCCI1 (7p21.3) / PARP4 (13q12.12)LOC729852 () / GLCCI1 (7p21.3)USP42 (7p22.1) / GLCCI1 (7p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLCCI1   18713
Cards
Entrez_Gene (NCBI)GLCCI1  113263  glucocorticoid induced 1
AliasesFAM117C; GCTR; GIG18; TSSN1
GeneCards (Weizmann)GLCCI1
Ensembl hg19 (Hinxton)ENSG00000106415 [Gene_View]  chr7:8008374-8128709 [Contig_View]  GLCCI1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000106415 [Gene_View]  chr7:8008374-8128709 [Contig_View]  GLCCI1 [Vega]
ICGC DataPortalENSG00000106415
TCGA cBioPortalGLCCI1
AceView (NCBI)GLCCI1
Genatlas (Paris)GLCCI1
WikiGenes113263
SOURCE (Princeton)GLCCI1
Genetics Home Reference (NIH)GLCCI1
Genomic and cartography
GoldenPath hg19 (UCSC)GLCCI1  -     chr7:8008374-8128709 +  7p21.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GLCCI1  -     7p21.3   [Description]    (hg38-Dec_2013)
EnsemblGLCCI1 - 7p21.3 [CytoView hg19]  GLCCI1 - 7p21.3 [CytoView hg38]
Mapping of homologs : NCBIGLCCI1 [Mapview hg19]  GLCCI1 [Mapview hg38]
OMIM614283   614400   
Gene and transcription
Genbank (Entrez)AK055741 AK093655 AK126731 AL832860 AL833694
RefSeq transcript (Entrez)NM_138426
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_032073 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)GLCCI1
Cluster EST : UnigeneHs.131673 [ NCBI ]
CGAP (NCI)Hs.131673
Alternative Splicing GalleryENSG00000106415
Gene ExpressionGLCCI1 [ NCBI-GEO ]   GLCCI1 [ EBI - ARRAY_EXPRESS ]   GLCCI1 [ SEEK ]   GLCCI1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLCCI1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)113263
GTEX Portal (Tissue expression)GLCCI1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86VQ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86VQ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86VQ1
Splice isoforms : SwissVarQ86VQ1
PhosPhoSitePlusQ86VQ1
Domains : Interpro (EBI)Glcci1    Glcci1/FAM117   
Domain families : Pfam (Sanger)FAM117 (PF15388)   
Domain families : Pfam (NCBI)pfam15388   
Conserved Domain (NCBI)GLCCI1
DMDM Disease mutations113263
Blocks (Seattle)GLCCI1
SuperfamilyQ86VQ1
Human Protein AtlasENSG00000106415
Peptide AtlasQ86VQ1
HPRD17043
IPIIPI00021595   IPI00902544   IPI00893978   IPI00893572   IPI00893711   
Protein Interaction databases
DIP (DOE-UCLA)Q86VQ1
IntAct (EBI)Q86VQ1
FunCoupENSG00000106415
BioGRIDGLCCI1
STRING (EMBL)GLCCI1
ZODIACGLCCI1
Ontologies - Pathways
QuickGOQ86VQ1
Ontology : AmiGOcytoplasm  
Ontology : EGO-EBIcytoplasm  
NDEx NetworkGLCCI1
Atlas of Cancer Signalling NetworkGLCCI1
Wikipedia pathwaysGLCCI1
Orthology - Evolution
OrthoDB113263
GeneTree (enSembl)ENSG00000106415
Phylogenetic Trees/Animal Genes : TreeFamGLCCI1
HOVERGENQ86VQ1
HOGENOMQ86VQ1
Homologs : HomoloGeneGLCCI1
Homology/Alignments : Family Browser (UCSC)GLCCI1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLCCI1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLCCI1
dbVarGLCCI1
ClinVarGLCCI1
1000_GenomesGLCCI1 
Exome Variant ServerGLCCI1
ExAC (Exome Aggregation Consortium)GLCCI1 (select the gene name)
Genetic variants : HAPMAP113263
Genomic Variants (DGV)GLCCI1 [DGVbeta]
DECIPHER (Syndromes)7:8008374-8128709  ENSG00000106415
CONAN: Copy Number AnalysisGLCCI1 
Mutations
ICGC Data PortalGLCCI1 
TCGA Data PortalGLCCI1 
Broad Tumor PortalGLCCI1
OASIS PortalGLCCI1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLCCI1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLCCI1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLCCI1
DgiDB (Drug Gene Interaction Database)GLCCI1
DoCM (Curated mutations)GLCCI1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLCCI1 (select a term)
intoGenGLCCI1
Cancer3DGLCCI1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614283    614400   
Orphanet
MedgenGLCCI1
Genetic Testing Registry GLCCI1
NextProtQ86VQ1 [Medical]
TSGene113263
GENETestsGLCCI1
Huge Navigator GLCCI1 [HugePedia]
snp3D : Map Gene to Disease113263
BioCentury BCIQGLCCI1
ClinGenGLCCI1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD113263
Chemical/Pharm GKB GenePA38657
Clinical trialGLCCI1
Miscellaneous
canSAR (ICR)GLCCI1 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLCCI1
EVEXGLCCI1
GoPubMedGLCCI1
iHOPGLCCI1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:11 CET 2017

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