Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GLDN (gliomedin)

Identity

Alias_namesCOLM
collomin
Alias_symbol (synonym)CRG-L2
CLOM
colmedin
UNC-112
Other aliasCRGL2
LCCS11
HGNC (Hugo) GLDN
LocusID (NCBI) 342035
Atlas_Id 40147
Location 15q21.2  [Link to chromosome band 15q21]
Location_base_pair Starts at 51377246 and ends at 51408001 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
IGDCC3 (15q22.31) / GLDN (15q21.2)IGDCC3 15q22.31 / GLDN 15q21.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLDN   29514
Cards
Entrez_Gene (NCBI)GLDN  342035  gliomedin
AliasesCLOM; COLM; CRG-L2; CRGL2; 
LCCS11; UNC-112
GeneCards (Weizmann)GLDN
Ensembl hg19 (Hinxton)ENSG00000186417 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186417 [Gene_View]  chr15:51377246-51408001 [Contig_View]  GLDN [Vega]
ICGC DataPortalENSG00000186417
TCGA cBioPortalGLDN
AceView (NCBI)GLDN
Genatlas (Paris)GLDN
WikiGenes342035
SOURCE (Princeton)GLDN
Genetics Home Reference (NIH)GLDN
Genomic and cartography
GoldenPath hg38 (UCSC)GLDN  -     chr15:51377246-51408001 +  15q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLDN  -     15q21.2   [Description]    (hg19-Feb_2009)
EnsemblGLDN - 15q21.2 [CytoView hg19]  GLDN - 15q21.2 [CytoView hg38]
Mapping of homologs : NCBIGLDN [Mapview hg19]  GLDN [Mapview hg38]
OMIM608603   617194   
Gene and transcription
Genbank (Entrez)AK023623 AK095128 AK172756 AK308933 AK310755
RefSeq transcript (Entrez)NM_001330297 NM_181789
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLDN
Cluster EST : UnigeneHs.526441 [ NCBI ]
CGAP (NCI)Hs.526441
Alternative Splicing GalleryENSG00000186417
Gene ExpressionGLDN [ NCBI-GEO ]   GLDN [ EBI - ARRAY_EXPRESS ]   GLDN [ SEEK ]   GLDN [ MEM ]
Gene Expression Viewer (FireBrowse)GLDN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)342035
GTEX Portal (Tissue expression)GLDN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZMI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZMI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZMI3
Splice isoforms : SwissVarQ6ZMI3
PhosPhoSitePlusQ6ZMI3
Domaine pattern : Prosite (Expaxy)OLF (PS51132)   
Domains : Interpro (EBI)Collagen    Gliomedin    Olfac-like_dom   
Domain families : Pfam (Sanger)Collagen (PF01391)    OLF (PF02191)   
Domain families : Pfam (NCBI)pfam01391    pfam02191   
Domain families : Smart (EMBL)OLF (SM00284)  
Conserved Domain (NCBI)GLDN
DMDM Disease mutations342035
Blocks (Seattle)GLDN
SuperfamilyQ6ZMI3
Human Protein AtlasENSG00000186417
Peptide AtlasQ6ZMI3
HPRD12267
IPIIPI00418531   IPI00743511   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZMI3
IntAct (EBI)Q6ZMI3
FunCoupENSG00000186417
BioGRIDGLDN
STRING (EMBL)GLDN
ZODIACGLDN
Ontologies - Pathways
QuickGOQ6ZMI3
Ontology : AmiGOproteinaceous extracellular matrix  collagen trimer  extracellular space  plasma membrane  integral component of membrane  microvillus organization  heterotypic cell-cell adhesion  clustering of voltage-gated sodium channels  protein binding involved in heterotypic cell-cell adhesion  
Ontology : EGO-EBIproteinaceous extracellular matrix  collagen trimer  extracellular space  plasma membrane  integral component of membrane  microvillus organization  heterotypic cell-cell adhesion  clustering of voltage-gated sodium channels  protein binding involved in heterotypic cell-cell adhesion  
NDEx NetworkGLDN
Atlas of Cancer Signalling NetworkGLDN
Wikipedia pathwaysGLDN
Orthology - Evolution
OrthoDB342035
GeneTree (enSembl)ENSG00000186417
Phylogenetic Trees/Animal Genes : TreeFamGLDN
HOVERGENQ6ZMI3
HOGENOMQ6ZMI3
Homologs : HomoloGeneGLDN
Homology/Alignments : Family Browser (UCSC)GLDN
Gene fusions - Rearrangements
Fusion : MitelmanIGDCC3/GLDN [15q22.31/15q21.2]  [t(15;15)(q21;q22)]  
Fusion: TCGAIGDCC3 15q22.31 GLDN 15q21.2 LGG
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLDN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLDN
dbVarGLDN
ClinVarGLDN
1000_GenomesGLDN 
Exome Variant ServerGLDN
ExAC (Exome Aggregation Consortium)GLDN (select the gene name)
Genetic variants : HAPMAP342035
Genomic Variants (DGV)GLDN [DGVbeta]
DECIPHERGLDN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLDN 
Mutations
ICGC Data PortalGLDN 
TCGA Data PortalGLDN 
Broad Tumor PortalGLDN
OASIS PortalGLDN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLDN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLDN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLDN
DgiDB (Drug Gene Interaction Database)GLDN
DoCM (Curated mutations)GLDN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLDN (select a term)
intoGenGLDN
Cancer3DGLDN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608603    617194   
Orphanet
MedgenGLDN
Genetic Testing Registry GLDN
NextProtQ6ZMI3 [Medical]
TSGene342035
GENETestsGLDN
Target ValidationGLDN
Huge Navigator GLDN [HugePedia]
snp3D : Map Gene to Disease342035
BioCentury BCIQGLDN
ClinGenGLDN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD342035
Chemical/Pharm GKB GenePA134882405
Clinical trialGLDN
Miscellaneous
canSAR (ICR)GLDN (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLDN
EVEXGLDN
GoPubMedGLDN
iHOPGLDN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:35:20 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.