Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GLG1 (golgi glycoprotein 1)

Identity

Alias_namesgolgi apparatus protein 1
Alias_symbol (synonym)MG-160
ESL-1
CFR-1
Other aliasMG160
HGNC (Hugo) GLG1
LocusID (NCBI) 2734
Atlas_Id 45675
Location 16q23.1  [Link to chromosome band 16q23]
Location_base_pair Starts at 74481326 and ends at 74641042 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
GLG1 (16q23.1) / CFDP1 (16q23.1)GLG1 (16q23.1) / COG4 (16q22.1)GLG1 (16q23.1) / ERBB3 (12q13.2)
GLG1 (16q23.1) / FA2H (16q23.1)GLG1 (16q23.1) / GLG1 (16q23.1)GLG1 (16q23.1) / NUMA1 (11q13.4)
GLG1 (16q23.1) / SPARC (5q33.1)GLG1 (16q23.1) / TMEM127 (2q11.2)GNGT1 (7q21.3) / GLG1 (16q23.1)
MEF2A (15q26.3) / GLG1 (16q23.1)TRIO (5p15.2) / GLG1 (16q23.1)GLG1 16q23.1 / CFDP1 16q23.1
GLG1 16q23.1 / COG4 16q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLG1   4316
Cards
Entrez_Gene (NCBI)GLG1  2734  golgi glycoprotein 1
AliasesCFR-1; ESL-1; MG-160; MG160
GeneCards (Weizmann)GLG1
Ensembl hg19 (Hinxton)ENSG00000090863 [Gene_View]  chr16:74481326-74641042 [Contig_View]  GLG1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000090863 [Gene_View]  chr16:74481326-74641042 [Contig_View]  GLG1 [Vega]
ICGC DataPortalENSG00000090863
TCGA cBioPortalGLG1
AceView (NCBI)GLG1
Genatlas (Paris)GLG1
WikiGenes2734
SOURCE (Princeton)GLG1
Genetics Home Reference (NIH)GLG1
Genomic and cartography
GoldenPath hg19 (UCSC)GLG1  -     chr16:74481326-74641042 -  16q23.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GLG1  -     16q23.1   [Description]    (hg38-Dec_2013)
EnsemblGLG1 - 16q23.1 [CytoView hg19]  GLG1 - 16q23.1 [CytoView hg38]
Mapping of homologs : NCBIGLG1 [Mapview hg19]  GLG1 [Mapview hg38]
OMIM600753   
Gene and transcription
Genbank (Entrez)AK025457 AK026972 AK027032 AK057359 AK095842
RefSeq transcript (Entrez)NM_001145666 NM_001145667 NM_012201
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)GLG1
Cluster EST : UnigeneHs.109731 [ NCBI ]
CGAP (NCI)Hs.109731
Alternative Splicing GalleryENSG00000090863
Gene ExpressionGLG1 [ NCBI-GEO ]   GLG1 [ EBI - ARRAY_EXPRESS ]   GLG1 [ SEEK ]   GLG1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)2734
GTEX Portal (Tissue expression)GLG1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92896   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ92896  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ92896
Splice isoforms : SwissVarQ92896
PhosPhoSitePlusQ92896
Domaine pattern : Prosite (Expaxy)GLG1_C_RICH (PS51289)   
Domains : Interpro (EBI)Cys-rich_GLG1_repeat    Cys-rich_GLG1_repeat_euk   
Domain families : Pfam (Sanger)Cys_rich_FGFR (PF00839)   
Domain families : Pfam (NCBI)pfam00839   
Conserved Domain (NCBI)GLG1
DMDM Disease mutations2734
Blocks (Seattle)GLG1
SuperfamilyQ92896
Human Protein AtlasENSG00000090863
Peptide AtlasQ92896
HPRD02855
IPIIPI00641153   IPI00414717   IPI00923461   
Protein Interaction databases
DIP (DOE-UCLA)Q92896
IntAct (EBI)Q92896
FunCoupENSG00000090863
BioGRIDGLG1
STRING (EMBL)GLG1
ZODIACGLG1
Ontologies - Pathways
QuickGOQ92896
Ontology : AmiGOGolgi membrane  receptor binding  proteinaceous extracellular matrix  Golgi apparatus  plasma membrane  negative regulation of protein processing  membrane  integral component of membrane  fibroblast growth factor binding  negative regulation of transforming growth factor beta receptor signaling pathway  regulation of chondrocyte differentiation  leukocyte migration  bone morphogenesis  extracellular exosome  
Ontology : EGO-EBIGolgi membrane  receptor binding  proteinaceous extracellular matrix  Golgi apparatus  plasma membrane  negative regulation of protein processing  membrane  integral component of membrane  fibroblast growth factor binding  negative regulation of transforming growth factor beta receptor signaling pathway  regulation of chondrocyte differentiation  leukocyte migration  bone morphogenesis  extracellular exosome  
Pathways : KEGGCell adhesion molecules (CAMs)   
NDEx NetworkGLG1
Atlas of Cancer Signalling NetworkGLG1
Wikipedia pathwaysGLG1
Orthology - Evolution
OrthoDB2734
GeneTree (enSembl)ENSG00000090863
Phylogenetic Trees/Animal Genes : TreeFamGLG1
HOVERGENQ92896
HOGENOMQ92896
Homologs : HomoloGeneGLG1
Homology/Alignments : Family Browser (UCSC)GLG1
Gene fusions - Rearrangements
Fusion : MitelmanGLG1/CFDP1 [16q23.1/16q23.1]  
Fusion : MitelmanGLG1/COG4 [16q23.1/16q22.1]  [t(16;16)(q22;q23)]  
Fusion: TCGAGLG1 16q23.1 CFDP1 16q23.1 LGG LUSC
Fusion: TCGAGLG1 16q23.1 COG4 16q22.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLG1
dbVarGLG1
ClinVarGLG1
1000_GenomesGLG1 
Exome Variant ServerGLG1
ExAC (Exome Aggregation Consortium)GLG1 (select the gene name)
Genetic variants : HAPMAP2734
Genomic Variants (DGV)GLG1 [DGVbeta]
DECIPHER (Syndromes)16:74481326-74641042  ENSG00000090863
CONAN: Copy Number AnalysisGLG1 
Mutations
ICGC Data PortalGLG1 
TCGA Data PortalGLG1 
Broad Tumor PortalGLG1
OASIS PortalGLG1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLG1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLG1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLG1
DgiDB (Drug Gene Interaction Database)GLG1
DoCM (Curated mutations)GLG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLG1 (select a term)
intoGenGLG1
Cancer3DGLG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600753   
Orphanet
MedgenGLG1
Genetic Testing Registry GLG1
NextProtQ92896 [Medical]
TSGene2734
GENETestsGLG1
Huge Navigator GLG1 [HugePedia]
snp3D : Map Gene to Disease2734
BioCentury BCIQGLG1
ClinGenGLG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD2734
Chemical/Pharm GKB GenePA28719
Clinical trialGLG1
Miscellaneous
canSAR (ICR)GLG1 (select the gene name)
Probes
Litterature
PubMed36 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLG1
EVEXGLG1
GoPubMedGLG1
iHOPGLG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:02:29 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.