Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA
Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome
If each casual visitor gives 3 Euros or Dollars, the Atlas is saved in a week !
If each professional gives 100 Euros or Dollars once a year (now), the Atlas is saved in 2 weeks !
Don't let the Atlas imminent demise
Note: we send fiscal receipts for donations equal or above 50 Euros or Dollars

Donate (in Euros)

Donate (in US Dollars)

GLI4 (GLI family zinc finger 4)


Other namesHKR4
HGNC (Hugo) GLI4
LocusID (NCBI) 2738
Location 8q24.3
Location_base_pair Starts at 144349607 and ends at 144359101 bp from pter ( according to hg19-Feb_2009)

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

HGNC (Hugo)GLI4   4320
Entrez_Gene (NCBI)GLI4  2738  GLI family zinc finger 4
GeneCards (Weizmann)GLI4
Ensembl hg19 (Hinxton)ENSG00000250571 [Gene_View]  chr8:144349607-144359101 [Contig_View]  GLI4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000250571 [Gene_View]  chr8:144349607-144359101 [Contig_View]  GLI4 [Vega]
ICGC DataPortalENSG00000250571
AceView (NCBI)GLI4
Genatlas (Paris)GLI4
SOURCE (Princeton)GLI4
Genomic and cartography
GoldenPath hg19 (UCSC)GLI4  -     chr8:144349607-144359101 +  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GLI4  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblGLI4 - 8q24.3 [CytoView hg19]  GLI4 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIGLI4 [Mapview hg19]  GLI4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209654 AI829114 AY129020 BC014165 BI761835
RefSeq transcript (Entrez)NM_138465
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)GLI4
Cluster EST : UnigeneHs.400533 [ NCBI ]
CGAP (NCI)Hs.400533
Alternative Splicing : Fast-db (Paris)GSHG0034049
Alternative Splicing GalleryENSG00000250571
Gene ExpressionGLI4 [ NCBI-GEO ]     GLI4 [ SEEK ]   GLI4 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10075 (Uniprot)
NextProtP10075  [Medical]
With graphics : InterProP10075
Splice isoforms : SwissVarP10075 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrP10075
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations2738
Blocks (Seattle)P10075
Human Protein AtlasENSG00000250571
Peptide AtlasP10075
IPIIPI00060440   IPI00556662   IPI00433439   IPI00973797   IPI01011192   IPI00796603   IPI01010039   IPI01015736   
Protein Interaction databases
IntAct (EBI)P10075
Ontologies - Pathways
Ontology : AmiGOmolecular_function  DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Protein Interaction DatabaseGLI4
DoCM (Curated mutations)GLI4
Wikipedia pathwaysGLI4
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerGLI4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLI4
Exome Variant ServerGLI4
SNP (GeneSNP Utah)GLI4
Genetic variants : HAPMAPGLI4
Genomic Variants (DGV)GLI4 [DGVbeta]
ICGC Data PortalENSG00000250571 
Somatic Mutations in Cancer : COSMICGLI4 
CONAN: Copy Number AnalysisGLI4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
DECIPHER (Syndromes)8:144349607-144359101
Mutations and Diseases : HGMDGLI4
NextProtP10075 [Medical]
Disease Genetic AssociationGLI4
Huge Navigator GLI4 [HugePedia]  GLI4 [HugeCancerGEM]
snp3D : Map Gene to Disease2738
DGIdb (Drug Gene Interaction db)GLI4
General knowledge
Homologs : HomoloGeneGLI4
Homology/Alignments : Family Browser (UCSC)GLI4
Phylogenetic Trees/Animal Genes : TreeFamGLI4
Chemical/Protein Interactions : CTD2738
Chemical/Pharm GKB GenePA28723
Clinical trialGLI4
Cancer Resource (Charite)ENSG00000250571
Other databases
PubMed6 Pubmed reference(s) in Entrez
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI


Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Mar 28 15:29:49 CET 2015

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us