Atlas of Genetics and Cytogenetics in Oncology and Haematology


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GLI4 (GLI family zinc finger 4)

Identity

Other namesHKR4
ZNF928
HGNC (Hugo) GLI4
LocusID (NCBI) 2738
Atlas_Id 40720
Location 8q24.3
Location_base_pair Starts at 144349607 and ends at 144359101 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GLI4   4320
Cards
Entrez_Gene (NCBI)GLI4  2738  GLI family zinc finger 4
GeneCards (Weizmann)GLI4
Ensembl hg19 (Hinxton)ENSG00000250571 [Gene_View]  chr8:144349607-144359101 [Contig_View]  GLI4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000250571 [Gene_View]  chr8:144349607-144359101 [Contig_View]  GLI4 [Vega]
ICGC DataPortalENSG00000250571
TCGA cBioPortalGLI4
AceView (NCBI)GLI4
Genatlas (Paris)GLI4
WikiGenes2738
SOURCE (Princeton)GLI4
Genomic and cartography
GoldenPath hg19 (UCSC)GLI4  -     chr8:144349607-144359101 +  8q24.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GLI4  -     8q24.3   [Description]    (hg38-Dec_2013)
EnsemblGLI4 - 8q24.3 [CytoView hg19]  GLI4 - 8q24.3 [CytoView hg38]
Mapping of homologs : NCBIGLI4 [Mapview hg19]  GLI4 [Mapview hg38]
OMIM165280   
Gene and transcription
Genbank (Entrez)AB209654 AI829114 AY129020 BC014165 BI761835
RefSeq transcript (Entrez)NM_138465
RefSeq genomic (Entrez)NC_000008 NC_018919 NT_008046 NW_004929340
Consensus coding sequences : CCDS (NCBI)GLI4
Cluster EST : UnigeneHs.400533 [ NCBI ]
CGAP (NCI)Hs.400533
Alternative Splicing : Fast-db (Paris)GSHG0034049
Alternative Splicing GalleryENSG00000250571
Gene ExpressionGLI4 [ NCBI-GEO ]     GLI4 [ SEEK ]   GLI4 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP10075 (Uniprot)
NextProtP10075  [Medical]
With graphics : InterProP10075
Splice isoforms : SwissVarP10075 (Swissvar)
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Related proteins : CluSTrP10075
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
DMDM Disease mutations2738
Blocks (Seattle)P10075
Human Protein AtlasENSG00000250571
Peptide AtlasP10075
HPRD01317
IPIIPI00060440   IPI00556662   IPI00433439   IPI00973797   IPI01011192   IPI00796603   IPI01010039   IPI01015736   
Protein Interaction databases
DIP (DOE-UCLA)P10075
IntAct (EBI)P10075
FunCoupENSG00000250571
BioGRIDGLI4
IntegromeDBGLI4
STRING (EMBL)GLI4
Ontologies - Pathways
QuickGOP10075
Ontology : AmiGOmolecular_function  DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Ontology : EGO-EBImolecular_function  DNA binding  sequence-specific DNA binding transcription factor activity  nucleus  regulation of transcription, DNA-templated  biological_process  metal ion binding  
Protein Interaction DatabaseGLI4
DoCM (Curated mutations)GLI4
Wikipedia pathwaysGLI4
Gene fusion - Rearrangements
Gene fusion: TCGA
Polymorphisms : SNP, variants
NCBI Variation ViewerGLI4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLI4
dbVarGLI4
ClinVarGLI4
1000_GenomesGLI4 
Exome Variant ServerGLI4
SNP (GeneSNP Utah)GLI4
SNP : HGBaseGLI4
Genetic variants : HAPMAPGLI4
Genomic Variants (DGV)GLI4 [DGVbeta]
Mutations
ICGC Data PortalGLI4 
TCGA Data PortalGLI4 
Tumor PortalGLI4
Somatic Mutations in Cancer : COSMICGLI4 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)8:144349607-144359101
CONAN: Copy Number AnalysisGLI4 
Mutations and Diseases : HGMDGLI4
OMIM165280   
MedgenGLI4
NextProtP10075 [Medical]
GENETestsGLI4
Disease Genetic AssociationGLI4
Huge Navigator GLI4 [HugePedia]  GLI4 [HugeCancerGEM]
snp3D : Map Gene to Disease2738
DGIdb (Drug Gene Interaction db)GLI4
General knowledge
Homologs : HomoloGeneGLI4
Homology/Alignments : Family Browser (UCSC)GLI4
Phylogenetic Trees/Animal Genes : TreeFamGLI4
Chemical/Protein Interactions : CTD2738
Chemical/Pharm GKB GenePA28723
Clinical trialGLI4
Cancer Resource (Charite)ENSG00000250571
Other databases
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
CoreMineGLI4
GoPubMedGLI4
iHOPGLI4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated02-2015Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Apr 13 14:29:23 CEST 2015

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