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GLIDR (glioblastoma down-regulated RNA)

Identity

Alias_namesLINC01172
long intergenic non-protein coding RNA 1172
Alias_symbol (synonym)MGC21881
TCONS_00015562
Other alias
HGNC (Hugo) GLIDR
LocusID (NCBI) 389741
Atlas_Id 63815
Location 9p12  [Link to chromosome band 9p12]
Location_base_pair Starts at 39807381 and ends at 39810058 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLIDR   48823
Cards
Entrez_Gene (NCBI)GLIDR  389741  glioblastoma down-regulated RNA
AliasesLINC01172; TCONS_00015562
GeneCards (Weizmann)GLIDR
Ensembl hg19 (Hinxton)ENSG00000278175 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000278175 [Gene_View]  chr9:39807381-39810058 [Contig_View]  GLIDR [Vega]
ICGC DataPortalENSG00000278175
TCGA cBioPortalGLIDR
AceView (NCBI)GLIDR
Genatlas (Paris)GLIDR
WikiGenes389741
SOURCE (Princeton)GLIDR
Genetics Home Reference (NIH)GLIDR
Genomic and cartography
GoldenPath hg38 (UCSC)GLIDR  -     chr9:39807381-39810058 -  9p12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLIDR  -     9p12   [Description]    (hg19-Feb_2009)
EnsemblGLIDR - 9p12 [CytoView hg19]  GLIDR - 9p12 [CytoView hg38]
Mapping of homologs : NCBIGLIDR [Mapview hg19]  GLIDR [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK092305 AK095690 BC000869 BC015151 BC019880
RefSeq transcript (Entrez)NM_203448
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLIDR
Cluster EST : UnigeneHs.732469 [ NCBI ]
CGAP (NCI)Hs.732469
Alternative Splicing GalleryENSG00000278175
Gene ExpressionGLIDR [ NCBI-GEO ]   GLIDR [ EBI - ARRAY_EXPRESS ]   GLIDR [ SEEK ]   GLIDR [ MEM ]
Gene Expression Viewer (FireBrowse)GLIDR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)389741
GTEX Portal (Tissue expression)GLIDR
Human Protein AtlasENSG00000278175-GLIDR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GLIDR
DMDM Disease mutations389741
Blocks (Seattle)GLIDR
Human Protein Atlas [tissue]ENSG00000278175-GLIDR [tissue]
HPRD17520
IPIIPI00746098   
Protein Interaction databases
FunCoupENSG00000278175
BioGRIDGLIDR
STRING (EMBL)GLIDR
ZODIACGLIDR
Ontologies - Pathways
Huge Navigator GLIDR [HugePedia]
snp3D : Map Gene to Disease389741
BioCentury BCIQGLIDR
ClinGenGLIDR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389741
Clinical trialGLIDR
Miscellaneous
canSAR (ICR)GLIDR (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLIDR
EVEXGLIDR
GoPubMedGLIDR
iHOPGLIDR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:19:50 CET 2017

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