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GLIPR1L1 (GLI pathogenesis related 1 like 1)

Identity

Alias_namesGLI pathogenesis-related 1 like 1
Alias_symbol (synonym)MGC26856
Other aliasALKN2972
PRO7434
HGNC (Hugo) GLIPR1L1
LocusID (NCBI) 256710
Atlas_Id 63816
Location 12q21.2  [Link to chromosome band 12q21]
Location_base_pair Starts at 75334639 and ends at 75370389 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CASK (Xp11.4) / GLIPR1L1 (12q21.2)RAP1B (12q15) / GLIPR1L1 (12q21.2)RAP1B GLIPR1L1
CASK GLIPR1L1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLIPR1L1   28392
Cards
Entrez_Gene (NCBI)GLIPR1L1  256710  GLI pathogenesis related 1 like 1
AliasesALKN2972; PRO7434
GeneCards (Weizmann)GLIPR1L1
Ensembl hg19 (Hinxton)ENSG00000173401 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173401 [Gene_View]  chr12:75334639-75370389 [Contig_View]  GLIPR1L1 [Vega]
ICGC DataPortalENSG00000173401
TCGA cBioPortalGLIPR1L1
AceView (NCBI)GLIPR1L1
Genatlas (Paris)GLIPR1L1
WikiGenes256710
SOURCE (Princeton)GLIPR1L1
Genetics Home Reference (NIH)GLIPR1L1
Genomic and cartography
GoldenPath hg38 (UCSC)GLIPR1L1  -     chr12:75334639-75370389 +  12q21.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLIPR1L1  -     12q21.2   [Description]    (hg19-Feb_2009)
EnsemblGLIPR1L1 - 12q21.2 [CytoView hg19]  GLIPR1L1 - 12q21.2 [CytoView hg38]
Mapping of homologs : NCBIGLIPR1L1 [Mapview hg19]  GLIPR1L1 [Mapview hg38]
OMIM610395   
Gene and transcription
Genbank (Entrez)AY358731 BC014603 BG196035 DQ894020 EU176187
RefSeq transcript (Entrez)NM_001304964 NM_152779
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLIPR1L1
Cluster EST : UnigeneHs.567788 [ NCBI ]
CGAP (NCI)Hs.567788
Alternative Splicing GalleryENSG00000173401
Gene ExpressionGLIPR1L1 [ NCBI-GEO ]   GLIPR1L1 [ EBI - ARRAY_EXPRESS ]   GLIPR1L1 [ SEEK ]   GLIPR1L1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLIPR1L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)256710
GTEX Portal (Tissue expression)GLIPR1L1
Human Protein AtlasENSG00000173401-GLIPR1L1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6UWM5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6UWM5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6UWM5
Splice isoforms : SwissVarQ6UWM5
PhosPhoSitePlusQ6UWM5
Domaine pattern : Prosite (Expaxy)CRISP_1 (PS01009)    CRISP_2 (PS01010)   
Domains : Interpro (EBI)Allrgn_V5/Tpx1    Allrgn_V5/Tpx1_CS    CAP_domain    SCP_GLIPR-1-like    V5_allergen   
Domain families : Pfam (Sanger)CAP (PF00188)   
Domain families : Pfam (NCBI)pfam00188   
Domain families : Smart (EMBL)SCP (SM00198)  
Conserved Domain (NCBI)GLIPR1L1
DMDM Disease mutations256710
Blocks (Seattle)GLIPR1L1
SuperfamilyQ6UWM5
Human Protein Atlas [tissue]ENSG00000173401-GLIPR1L1 [tissue]
Peptide AtlasQ6UWM5
HPRD14514
IPIIPI00064712   IPI00746106   IPI01022722   
Protein Interaction databases
DIP (DOE-UCLA)Q6UWM5
IntAct (EBI)Q6UWM5
FunCoupENSG00000173401
BioGRIDGLIPR1L1
STRING (EMBL)GLIPR1L1
ZODIACGLIPR1L1
Ontologies - Pathways
QuickGOQ6UWM5
Ontology : AmiGOextracellular region  
Ontology : EGO-EBIextracellular region  
NDEx NetworkGLIPR1L1
Atlas of Cancer Signalling NetworkGLIPR1L1
Wikipedia pathwaysGLIPR1L1
Orthology - Evolution
OrthoDB256710
GeneTree (enSembl)ENSG00000173401
Phylogenetic Trees/Animal Genes : TreeFamGLIPR1L1
HOVERGENQ6UWM5
HOGENOMQ6UWM5
Homologs : HomoloGeneGLIPR1L1
Homology/Alignments : Family Browser (UCSC)GLIPR1L1
Gene fusions - Rearrangements
Fusion: TCGA_MDACCRAP1B GLIPR1L1
Fusion: TCGA_MDACCCASK GLIPR1L1
Tumor Fusion PortalGLIPR1L1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLIPR1L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLIPR1L1
dbVarGLIPR1L1
ClinVarGLIPR1L1
1000_GenomesGLIPR1L1 
Exome Variant ServerGLIPR1L1
ExAC (Exome Aggregation Consortium)ENSG00000173401
GNOMAD BrowserENSG00000173401
Genetic variants : HAPMAP256710
Genomic Variants (DGV)GLIPR1L1 [DGVbeta]
DECIPHERGLIPR1L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLIPR1L1 
Mutations
ICGC Data PortalGLIPR1L1 
TCGA Data PortalGLIPR1L1 
Broad Tumor PortalGLIPR1L1
OASIS PortalGLIPR1L1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLIPR1L1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLIPR1L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLIPR1L1
DgiDB (Drug Gene Interaction Database)GLIPR1L1
DoCM (Curated mutations)GLIPR1L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLIPR1L1 (select a term)
intoGenGLIPR1L1
Cancer3DGLIPR1L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610395   
Orphanet
DisGeNETGLIPR1L1
MedgenGLIPR1L1
Genetic Testing Registry GLIPR1L1
NextProtQ6UWM5 [Medical]
TSGene256710
GENETestsGLIPR1L1
Target ValidationGLIPR1L1
Huge Navigator GLIPR1L1 [HugePedia]
snp3D : Map Gene to Disease256710
BioCentury BCIQGLIPR1L1
ClinGenGLIPR1L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD256710
Chemical/Pharm GKB GenePA145008265
Clinical trialGLIPR1L1
Miscellaneous
canSAR (ICR)GLIPR1L1 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLIPR1L1
EVEXGLIPR1L1
GoPubMedGLIPR1L1
iHOPGLIPR1L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:26:11 CET 2017

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