Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GLIPR1L2 (GLI pathogenesis-related 1 like 2)

Identity

Alias_symbol (synonym)MGC39497
Other alias-
HGNC (Hugo) GLIPR1L2
LocusID (NCBI) 144321
Atlas_Id 63817
Location 12q21.2  [Link to chromosome band 12q21]
Location_base_pair Starts at 75784850 and ends at 75826177 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLIPR1L2   28592
Cards
Entrez_Gene (NCBI)GLIPR1L2  144321  GLI pathogenesis-related 1 like 2
Aliases
GeneCards (Weizmann)GLIPR1L2
Ensembl hg19 (Hinxton)ENSG00000180481 [Gene_View]  chr12:75784850-75826177 [Contig_View]  GLIPR1L2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000180481 [Gene_View]  chr12:75784850-75826177 [Contig_View]  GLIPR1L2 [Vega]
ICGC DataPortalENSG00000180481
TCGA cBioPortalGLIPR1L2
AceView (NCBI)GLIPR1L2
Genatlas (Paris)GLIPR1L2
WikiGenes144321
SOURCE (Princeton)GLIPR1L2
Genetics Home Reference (NIH)GLIPR1L2
Genomic and cartography
GoldenPath hg19 (UCSC)GLIPR1L2  -     chr12:75784850-75826177 +  12q21.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GLIPR1L2  -     12q21.2   [Description]    (hg38-Dec_2013)
EnsemblGLIPR1L2 - 12q21.2 [CytoView hg19]  GLIPR1L2 - 12q21.2 [CytoView hg38]
Mapping of homologs : NCBIGLIPR1L2 [Mapview hg19]  GLIPR1L2 [Mapview hg38]
OMIM610394   
Gene and transcription
Genbank (Entrez)AA649108 AK093175 BC016749 BC029557 BC032022
RefSeq transcript (Entrez)NM_001270396 NM_152436
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)GLIPR1L2
Cluster EST : UnigeneHs.406728 [ NCBI ]
CGAP (NCI)Hs.406728
Alternative Splicing GalleryENSG00000180481
Gene ExpressionGLIPR1L2 [ NCBI-GEO ]   GLIPR1L2 [ EBI - ARRAY_EXPRESS ]   GLIPR1L2 [ SEEK ]   GLIPR1L2 [ MEM ]
Gene Expression Viewer (FireBrowse)GLIPR1L2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144321
GTEX Portal (Tissue expression)GLIPR1L2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ4G1C9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ4G1C9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ4G1C9
Splice isoforms : SwissVarQ4G1C9
PhosPhoSitePlusQ4G1C9
Domains : Interpro (EBI)Allrgn_V5/Tpx1    CAP_domain   
Domain families : Pfam (Sanger)CAP (PF00188)   
Domain families : Pfam (NCBI)pfam00188   
Domain families : Smart (EMBL)SCP (SM00198)  
Conserved Domain (NCBI)GLIPR1L2
DMDM Disease mutations144321
Blocks (Seattle)GLIPR1L2
SuperfamilyQ4G1C9
Human Protein AtlasENSG00000180481
Peptide AtlasQ4G1C9
HPRD17538
IPIIPI00644623   IPI00167040   IPI00426028   IPI00887390   IPI00887563   IPI00886902   
Protein Interaction databases
DIP (DOE-UCLA)Q4G1C9
IntAct (EBI)Q4G1C9
FunCoupENSG00000180481
BioGRIDGLIPR1L2
STRING (EMBL)GLIPR1L2
ZODIACGLIPR1L2
Ontologies - Pathways
QuickGOQ4G1C9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkGLIPR1L2
Atlas of Cancer Signalling NetworkGLIPR1L2
Wikipedia pathwaysGLIPR1L2
Orthology - Evolution
OrthoDB144321
GeneTree (enSembl)ENSG00000180481
Phylogenetic Trees/Animal Genes : TreeFamGLIPR1L2
HOVERGENQ4G1C9
HOGENOMQ4G1C9
Homologs : HomoloGeneGLIPR1L2
Homology/Alignments : Family Browser (UCSC)GLIPR1L2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLIPR1L2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLIPR1L2
dbVarGLIPR1L2
ClinVarGLIPR1L2
1000_GenomesGLIPR1L2 
Exome Variant ServerGLIPR1L2
ExAC (Exome Aggregation Consortium)GLIPR1L2 (select the gene name)
Genetic variants : HAPMAP144321
Genomic Variants (DGV)GLIPR1L2 [DGVbeta]
DECIPHER (Syndromes)12:75784850-75826177  ENSG00000180481
CONAN: Copy Number AnalysisGLIPR1L2 
Mutations
ICGC Data PortalGLIPR1L2 
TCGA Data PortalGLIPR1L2 
Broad Tumor PortalGLIPR1L2
OASIS PortalGLIPR1L2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLIPR1L2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLIPR1L2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLIPR1L2
DgiDB (Drug Gene Interaction Database)GLIPR1L2
DoCM (Curated mutations)GLIPR1L2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLIPR1L2 (select a term)
intoGenGLIPR1L2
Cancer3DGLIPR1L2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610394   
Orphanet
MedgenGLIPR1L2
Genetic Testing Registry GLIPR1L2
NextProtQ4G1C9 [Medical]
TSGene144321
GENETestsGLIPR1L2
Huge Navigator GLIPR1L2 [HugePedia]
snp3D : Map Gene to Disease144321
BioCentury BCIQGLIPR1L2
ClinGenGLIPR1L2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144321
Chemical/Pharm GKB GenePA145008279
Clinical trialGLIPR1L2
Miscellaneous
canSAR (ICR)GLIPR1L2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLIPR1L2
EVEXGLIPR1L2
GoPubMedGLIPR1L2
iHOPGLIPR1L2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:06:12 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.