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GLIPR2 (GLI pathogenesis related 2)

Identity

Alias (NCBI)C9orf19
GAPR-1
GAPR1
HGNC (Hugo) GLIPR2
HGNC Alias symbGAPR-1
HGNC Previous nameC9orf19
HGNC Previous namechromosome 9 open reading frame 19
 GLI pathogenesis-related 2
LocusID (NCBI) 152007
Atlas_Id 54822
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 36136733 and ends at 36163906 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C22orf24 (22q12.3) / GLIPR2 (9p13.3)GLIPR2 (9p13.3) / GLIPR2 (9p13.3)GLIPR2 (9p13.3) / KLHL6 (3q27.1)
NUDT2 (9p13.3) / GLIPR2 (9p13.3)RNF38 (9p13.2) / GLIPR2 (9p13.3)SLC25A51 (9p13.2) / GLIPR2 (9p13.3)
ZCCHC7 (9p13.2) / GLIPR2 (9p13.3)MCART1 GLIPR2 9p13.3NUDT2 9p13.3 / GLIPR2 9p13.3
RNF38 9p13.2 / GLIPR2 9p13.3ZCCHC7 9p13.2 / GLIPR2 9p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)GLIPR2   18007
Cards
Entrez_Gene (NCBI)GLIPR2    GLI pathogenesis related 2
AliasesC9orf19; GAPR-1; GAPR1
GeneCards (Weizmann)GLIPR2
Ensembl hg19 (Hinxton)ENSG00000122694 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122694 [Gene_View]  ENSG00000122694 [Sequence]  chr9:36136733-36163906 [Contig_View]  GLIPR2 [Vega]
ICGC DataPortalENSG00000122694
TCGA cBioPortalGLIPR2
AceView (NCBI)GLIPR2
Genatlas (Paris)GLIPR2
SOURCE (Princeton)GLIPR2
Genetics Home Reference (NIH)GLIPR2
Genomic and cartography
GoldenPath hg38 (UCSC)GLIPR2  -     chr9:36136733-36163906 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLIPR2  -     9p13.3   [Description]    (hg19-Feb_2009)
GoldenPathGLIPR2 - 9p13.3 [CytoView hg19]  GLIPR2 - 9p13.3 [CytoView hg38]
ImmunoBaseENSG00000122694
Genome Data Viewer NCBIGLIPR2 [Mapview hg19]  
OMIM607141   
Gene and transcription
Genbank (Entrez)AI458414 AJ011129 AK074488 AK075091 AK091288
RefSeq transcript (Entrez)NM_001287010 NM_001287011 NM_001287012 NM_001287013 NM_001287014 NM_022343
Consensus coding sequences : CCDS (NCBI)GLIPR2
Gene ExpressionGLIPR2 [ NCBI-GEO ]   GLIPR2 [ EBI - ARRAY_EXPRESS ]   GLIPR2 [ SEEK ]   GLIPR2 [ MEM ]
Gene Expression Viewer (FireBrowse)GLIPR2 [ Firebrowse - Broad ]
GenevisibleExpression of GLIPR2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152007
GTEX Portal (Tissue expression)GLIPR2
Human Protein AtlasENSG00000122694-GLIPR2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4G4
PhosPhoSitePlusQ9H4G4
Domaine pattern : Prosite (Expaxy)CRISP_1 (PS01009)   
Domains : Interpro (EBI)Allrgn_V5/Tpx1_CS    CAP_domain    CAP_sf    CRISP-related    SCP_GAPR1-like   
Domain families : Pfam (Sanger)CAP (PF00188)   
Domain families : Pfam (NCBI)pfam00188   
Domain families : Smart (EMBL)SCP (SM00198)  
Conserved Domain (NCBI)GLIPR2
PDB (RSDB)1SMB    4AIW    5VHG   
PDB Europe1SMB    4AIW    5VHG   
PDB (PDBSum)1SMB    4AIW    5VHG   
PDB (IMB)1SMB    4AIW    5VHG   
Structural Biology KnowledgeBase1SMB    4AIW    5VHG   
SCOP (Structural Classification of Proteins)1SMB    4AIW    5VHG   
CATH (Classification of proteins structures)1SMB    4AIW    5VHG   
SuperfamilyQ9H4G4
AlphaFold pdb e-kbQ9H4G4   
Human Protein Atlas [tissue]ENSG00000122694-GLIPR2 [tissue]
HPRD06187
Protein Interaction databases
DIP (DOE-UCLA)Q9H4G4
IntAct (EBI)Q9H4G4
BioGRIDGLIPR2
STRING (EMBL)GLIPR2
ZODIACGLIPR2
Ontologies - Pathways
QuickGOQ9H4G4
Ontology : AmiGOGolgi membrane  extracellular space  positive regulation of epithelial cell migration  positive regulation of epithelial to mesenchymal transition  protein homodimerization activity  extracellular exosome  positive regulation of ERK1 and ERK2 cascade  
Ontology : EGO-EBIGolgi membrane  extracellular space  positive regulation of epithelial cell migration  positive regulation of epithelial to mesenchymal transition  protein homodimerization activity  extracellular exosome  positive regulation of ERK1 and ERK2 cascade  
NDEx NetworkGLIPR2
Atlas of Cancer Signalling NetworkGLIPR2
Wikipedia pathwaysGLIPR2
Orthology - Evolution
OrthoDB152007
GeneTree (enSembl)ENSG00000122694
Phylogenetic Trees/Animal Genes : TreeFamGLIPR2
Homologs : HomoloGeneGLIPR2
Homology/Alignments : Family Browser (UCSC)GLIPR2
Gene fusions - Rearrangements
Fusion : MitelmanNUDT2/GLIPR2 [9p13.3/9p13.3]  
Fusion : MitelmanRNF38/GLIPR2 [9p13.2/9p13.3]  
Fusion : MitelmanSLC25A51/GLIPR2 [9p13.2/9p13.3]  
Fusion : MitelmanZCCHC7/GLIPR2 [9p13.2/9p13.3]  
Fusion : QuiverGLIPR2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLIPR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLIPR2
dbVarGLIPR2
ClinVarGLIPR2
MonarchGLIPR2
1000_GenomesGLIPR2 
Exome Variant ServerGLIPR2
GNOMAD BrowserENSG00000122694
Varsome BrowserGLIPR2
ACMGGLIPR2 variants
VarityQ9H4G4
Genomic Variants (DGV)GLIPR2 [DGVbeta]
DECIPHERGLIPR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLIPR2 
Mutations
ICGC Data PortalGLIPR2 
TCGA Data PortalGLIPR2 
Broad Tumor PortalGLIPR2
OASIS PortalGLIPR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLIPR2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DGLIPR2
Mutations and Diseases : HGMDGLIPR2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaGLIPR2
DgiDB (Drug Gene Interaction Database)GLIPR2
DoCM (Curated mutations)GLIPR2
CIViC (Clinical Interpretations of Variants in Cancer)GLIPR2
Cancer3DGLIPR2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607141   
Orphanet
DisGeNETGLIPR2
MedgenGLIPR2
Genetic Testing Registry GLIPR2
NextProtQ9H4G4 [Medical]
GENETestsGLIPR2
Target ValidationGLIPR2
Huge Navigator GLIPR2 [HugePedia]
ClinGenGLIPR2
Clinical trials, drugs, therapy
MyCancerGenomeGLIPR2
Protein Interactions : CTDGLIPR2
Pharm GKB GenePA164720283
PharosQ9H4G4
Clinical trialGLIPR2
Miscellaneous
canSAR (ICR)GLIPR2
HarmonizomeGLIPR2
DataMed IndexGLIPR2
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXGLIPR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:10:53 CEST 2021

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