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GLIPR2 (GLI pathogenesis related 2)

Identity

Alias_namesC9orf19
chromosome 9 open reading frame 19
GLI pathogenesis-related 2
Alias_symbol (synonym)GAPR-1
Other aliasGAPR1
HGNC (Hugo) GLIPR2
LocusID (NCBI) 152007
Atlas_Id 54822
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 36136536 and ends at 36163913 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
C22orf24 (22q12.3) / GLIPR2 (9p13.3)GLIPR2 (9p13.3) / GLIPR2 (9p13.3)GLIPR2 (9p13.3) / KLHL6 (3q27.1)
NUDT2 (9p13.3) / GLIPR2 (9p13.3)RNF38 (9p13.2) / GLIPR2 (9p13.3)SLC25A51 (9p13.2) / GLIPR2 (9p13.3)
ZCCHC7 (9p13.2) / GLIPR2 (9p13.3)MCART1 GLIPR2 9p13.3NUDT2 9p13.3 / GLIPR2 9p13.3
RNF38 9p13.2 / GLIPR2 9p13.3ZCCHC7 9p13.2 / GLIPR2 9p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLIPR2   18007
Cards
Entrez_Gene (NCBI)GLIPR2  152007  GLI pathogenesis related 2
AliasesC9orf19; GAPR-1; GAPR1
GeneCards (Weizmann)GLIPR2
Ensembl hg19 (Hinxton)ENSG00000122694 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122694 [Gene_View]  chr9:36136536-36163913 [Contig_View]  GLIPR2 [Vega]
ICGC DataPortalENSG00000122694
TCGA cBioPortalGLIPR2
AceView (NCBI)GLIPR2
Genatlas (Paris)GLIPR2
WikiGenes152007
SOURCE (Princeton)GLIPR2
Genetics Home Reference (NIH)GLIPR2
Genomic and cartography
GoldenPath hg38 (UCSC)GLIPR2  -     chr9:36136536-36163913 +  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLIPR2  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblGLIPR2 - 9p13.3 [CytoView hg19]  GLIPR2 - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIGLIPR2 [Mapview hg19]  GLIPR2 [Mapview hg38]
OMIM607141   
Gene and transcription
Genbank (Entrez)AI458414 AJ011129 AK074488 AK075091 AK091288
RefSeq transcript (Entrez)NM_001287010 NM_001287011 NM_001287012 NM_001287013 NM_001287014 NM_022343
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLIPR2
Cluster EST : UnigeneHs.493819 [ NCBI ]
CGAP (NCI)Hs.493819
Alternative Splicing GalleryENSG00000122694
Gene ExpressionGLIPR2 [ NCBI-GEO ]   GLIPR2 [ EBI - ARRAY_EXPRESS ]   GLIPR2 [ SEEK ]   GLIPR2 [ MEM ]
Gene Expression Viewer (FireBrowse)GLIPR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)152007
GTEX Portal (Tissue expression)GLIPR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H4G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H4G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H4G4
Splice isoforms : SwissVarQ9H4G4
PhosPhoSitePlusQ9H4G4
Domaine pattern : Prosite (Expaxy)CRISP_1 (PS01009)   
Domains : Interpro (EBI)Allrgn_V5/Tpx1    Allrgn_V5/Tpx1_CS    CAP_domain    SCP_GAPR1-like   
Domain families : Pfam (Sanger)CAP (PF00188)   
Domain families : Pfam (NCBI)pfam00188   
Domain families : Smart (EMBL)SCP (SM00198)  
Conserved Domain (NCBI)GLIPR2
DMDM Disease mutations152007
Blocks (Seattle)GLIPR2
PDB (SRS)1SMB    4AIW   
PDB (PDBSum)1SMB    4AIW   
PDB (IMB)1SMB    4AIW   
PDB (RSDB)1SMB    4AIW   
Structural Biology KnowledgeBase1SMB    4AIW   
SCOP (Structural Classification of Proteins)1SMB    4AIW   
CATH (Classification of proteins structures)1SMB    4AIW   
SuperfamilyQ9H4G4
Human Protein AtlasENSG00000122694
Peptide AtlasQ9H4G4
HPRD06187
IPIIPI00007067   IPI00470830   IPI00479010   
Protein Interaction databases
DIP (DOE-UCLA)Q9H4G4
IntAct (EBI)Q9H4G4
FunCoupENSG00000122694
BioGRIDGLIPR2
STRING (EMBL)GLIPR2
ZODIACGLIPR2
Ontologies - Pathways
QuickGOQ9H4G4
Ontology : AmiGOGolgi membrane  positive regulation of epithelial cell migration  positive regulation of epithelial to mesenchymal transition  protein homodimerization activity  extracellular exosome  positive regulation of ERK1 and ERK2 cascade  
Ontology : EGO-EBIGolgi membrane  positive regulation of epithelial cell migration  positive regulation of epithelial to mesenchymal transition  protein homodimerization activity  extracellular exosome  positive regulation of ERK1 and ERK2 cascade  
NDEx NetworkGLIPR2
Atlas of Cancer Signalling NetworkGLIPR2
Wikipedia pathwaysGLIPR2
Orthology - Evolution
OrthoDB152007
GeneTree (enSembl)ENSG00000122694
Phylogenetic Trees/Animal Genes : TreeFamGLIPR2
HOVERGENQ9H4G4
HOGENOMQ9H4G4
Homologs : HomoloGeneGLIPR2
Homology/Alignments : Family Browser (UCSC)GLIPR2
Gene fusions - Rearrangements
Fusion : MitelmanNUDT2/GLIPR2 [9p13.3/9p13.3]  [t(9;9)(p13;p13)]  
Fusion : MitelmanRNF38/GLIPR2 [9p13.2/9p13.3]  [t(9;9)(p13;p13)]  
Fusion : MitelmanSLC25A51/GLIPR2 [9p13.2/9p13.3]  [t(9;9)(p13;p13)]  
Fusion : MitelmanZCCHC7/GLIPR2 [9p13.2/9p13.3]  [t(9;9)(p13;p13)]  
Fusion: TCGAMCART1 GLIPR2 9p13.3 BRCA
Fusion: TCGANUDT2 9p13.3 GLIPR2 9p13.3 GBM
Fusion: TCGARNF38 9p13.2 GLIPR2 9p13.3 BRCA
Fusion: TCGAZCCHC7 9p13.2 GLIPR2 9p13.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLIPR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLIPR2
dbVarGLIPR2
ClinVarGLIPR2
1000_GenomesGLIPR2 
Exome Variant ServerGLIPR2
ExAC (Exome Aggregation Consortium)GLIPR2 (select the gene name)
Genetic variants : HAPMAP152007
Genomic Variants (DGV)GLIPR2 [DGVbeta]
DECIPHERGLIPR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLIPR2 
Mutations
ICGC Data PortalGLIPR2 
TCGA Data PortalGLIPR2 
Broad Tumor PortalGLIPR2
OASIS PortalGLIPR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLIPR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLIPR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLIPR2
DgiDB (Drug Gene Interaction Database)GLIPR2
DoCM (Curated mutations)GLIPR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLIPR2 (select a term)
intoGenGLIPR2
Cancer3DGLIPR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607141   
Orphanet
MedgenGLIPR2
Genetic Testing Registry GLIPR2
NextProtQ9H4G4 [Medical]
TSGene152007
GENETestsGLIPR2
Target ValidationGLIPR2
Huge Navigator GLIPR2 [HugePedia]
snp3D : Map Gene to Disease152007
BioCentury BCIQGLIPR2
ClinGenGLIPR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD152007
Chemical/Pharm GKB GenePA164720283
Clinical trialGLIPR2
Miscellaneous
canSAR (ICR)GLIPR2 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLIPR2
EVEXGLIPR2
GoPubMedGLIPR2
iHOPGLIPR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 19:09:57 CEST 2017

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