| Nomenclature |
|---|
| HGNC (Hugo) | GLIS1 29525 |
| Cards |
|---|
| Entrez_Gene (NCBI) | GLIS1 148979 GLIS family zinc finger 1 |
| Aliases | |
| GeneCards (Weizmann) | GLIS1 |
| Ensembl hg19 (Hinxton) | ENSG00000174332 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000174332 [Gene_View] ENSG00000174332 [Sequence] chr1:53506233-53734204 [Contig_View] GLIS1 [Vega] |
| ICGC DataPortal | ENSG00000174332 |
| TCGA cBioPortal | GLIS1 |
| AceView (NCBI) | GLIS1 |
| Genatlas (Paris) | GLIS1 |
| WikiGenes | 148979 |
| SOURCE (Princeton) | GLIS1 |
| Genetics Home Reference (NIH) | GLIS1 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | GLIS1 - chr1:53506233-53734204 - 1p32.3 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | GLIS1 - 1p32.3 [Description] (hg19-Feb_2009) |
| GoldenPath | GLIS1 - 1p32.3 [CytoView hg19] GLIS1 - 1p32.3 [CytoView hg38] |
| ImmunoBase | ENSG00000174332 |
| genome Data Viewer NCBI | GLIS1 [Mapview hg19] |
| OMIM | 610378 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AK090634 AK093474 BC101799 BC104911 |
| RefSeq transcript (Entrez) | NM_001367484 NM_147193 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | GLIS1 |
| Alternative Splicing Gallery | ENSG00000174332 |
| Gene Expression | GLIS1 [ NCBI-GEO ] GLIS1 [ EBI - ARRAY_EXPRESS ]
GLIS1 [ SEEK ] GLIS1 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | GLIS1 [ Firebrowse - Broad ] |
| Genevisible | Expression of GLIS1 in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 148979 |
| GTEX Portal (Tissue expression) | GLIS1 |
| Human Protein Atlas | ENSG00000174332-GLIS1 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q8NBF1 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q8NBF1 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q8NBF1 |
| Splice isoforms : SwissVar | Q8NBF1 |
| PhosPhoSitePlus | Q8NBF1 |
| Domaine pattern : Prosite (Expaxy) | ZINC_FINGER_C2H2_1 (PS00028) ZINC_FINGER_C2H2_2 (PS50157) |
| Domains : Interpro (EBI) | GLIS1 Znf_C2H2_sf Znf_C2H2_type |
| Domain families : Pfam (Sanger) | zf-C2H2 (PF00096) |
| Domain families : Pfam (NCBI) | pfam00096 |
| Domain families : Smart (EMBL) | ZnF_C2H2 (SM00355) |
| Conserved Domain (NCBI) | GLIS1 |
| DMDM Disease mutations | 148979 |
| Blocks (Seattle) | GLIS1 |
| Superfamily | Q8NBF1 |
| Human Protein Atlas [tissue] | ENSG00000174332-GLIS1 [tissue] |
| Peptide Atlas | Q8NBF1 |
| HPRD | 13581 |
| IPI | IPI00168239 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q8NBF1 |
| IntAct (EBI) | Q8NBF1 |
| FunCoup | ENSG00000174332 |
| BioGRID | GLIS1 |
| STRING (EMBL) | GLIS1 |
| ZODIAC | GLIS1 |
| Ontologies - Pathways |
|---|
| QuickGO | Q8NBF1 |
| Ontology : AmiGO | negative regulation of transcription by RNA polymerase II RNA polymerase II regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific osteoblast differentiation nucleus negative regulation of cell fate commitment fat cell differentiation positive regulation of transcription by RNA polymerase II metal ion binding |
| Ontology : EGO-EBI | negative regulation of transcription by RNA polymerase II RNA polymerase II regulatory region sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription repressor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific osteoblast differentiation nucleus negative regulation of cell fate commitment fat cell differentiation positive regulation of transcription by RNA polymerase II metal ion binding |
| NDEx Network | GLIS1 |
| Atlas of Cancer Signalling Network | GLIS1 |
| Wikipedia pathways | GLIS1 |
| Orthology - Evolution |
|---|
| OrthoDB | 148979 |
| GeneTree (enSembl) | ENSG00000174332 |
| Phylogenetic Trees/Animal Genes : TreeFam | GLIS1 |
| HOGENOM | Q8NBF1 |
| Homologs : HomoloGene | GLIS1 |
| Homology/Alignments : Family Browser (UCSC) | GLIS1 |
| Gene fusions - Rearrangements |
|---|
| Fusion Portal | INADL GLIS1 |
| Fusion Portal | PAX8 GLIS1 |
| Fusion : Quiver | GLIS1 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | GLIS1 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | GLIS1 |
| dbVar | GLIS1 |
| ClinVar | GLIS1 |
| 1000_Genomes | GLIS1 |
| Exome Variant Server | GLIS1 |
| GNOMAD Browser | ENSG00000174332 |
| Varsome Browser | GLIS1 |
| Genetic variants : HAPMAP | 148979 |
| Genomic Variants (DGV) | GLIS1 [DGVbeta] |
| DECIPHER | GLIS1 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | GLIS1 |
| Mutations |
|---|
| ICGC Data Portal | GLIS1 |
| TCGA Data Portal | GLIS1 |
| Broad Tumor Portal | GLIS1 |
| OASIS Portal | GLIS1 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | GLIS1 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | GLIS1 |
| Mutations and Diseases : HGMD | GLIS1 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search GLIS1 |
| DgiDB (Drug Gene Interaction Database) | GLIS1 |
| DoCM (Curated mutations) | GLIS1 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | GLIS1 (select a term) |
| intoGen | GLIS1 |
| Cancer3D | GLIS1(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 610378 |
| Orphanet | |
| DisGeNET | GLIS1 |
| Medgen | GLIS1 |
| Genetic Testing Registry | GLIS1
|
| NextProt | Q8NBF1 [Medical] |
| TSGene | 148979 |
| GENETests | GLIS1 |
| Target Validation | GLIS1 |
| Huge Navigator |
GLIS1 [HugePedia] |
| snp3D : Map Gene to Disease | 148979 |
| BioCentury BCIQ | GLIS1 |
| ClinGen | GLIS1 |
| Clinical trials, drugs, therapy |
|---|
| Protein Interactions : CTD | 148979 |
| Pharm GKB Gene | PA134948186 |
| Clinical trial | GLIS1 |
| Miscellaneous |
|---|
| canSAR (ICR) | GLIS1 (select the gene name) |
| Harmonizome | GLIS1 |
| DataMed Index | GLIS1 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 15 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | GLIS1 |
| EVEX | GLIS1 |
| GoPubMed | GLIS1 |
