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GLIS1 (GLIS family zinc finger 1)

Identity

Alias_symbol (synonym)FLJ36155
Other alias-
HGNC (Hugo) GLIS1
LocusID (NCBI) 148979
Atlas_Id 63818
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 53506233 and ends at 53734204 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		ADCY5 (3q21.1) / GLIS1 (1p32.3)PATJ (1p31.3) / GLIS1 (1p32.3)PAX8 (2q13) / GLIS1 (1p32.3)
PNPLA1 (6p21.31) / GLIS1 (1p32.3)VMA21 (Xq28) / GLIS1 (1p32.3)INADL GLIS1
PAX8 GLIS1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)GLIS1   29525
Cards
Entrez_Gene (NCBI)GLIS1  148979  GLIS family zinc finger 1
Aliases
GeneCards (Weizmann)GLIS1
Ensembl hg19 (Hinxton)ENSG00000174332 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174332 [Gene_View]  chr1:53506233-53734204 [Contig_View]  GLIS1 [Vega]
ICGC DataPortalENSG00000174332
TCGA cBioPortalGLIS1
AceView (NCBI)GLIS1
Genatlas (Paris)GLIS1
WikiGenes148979
SOURCE (Princeton)GLIS1
Genetics Home Reference (NIH)GLIS1
Genomic and cartography
GoldenPath hg38 (UCSC)GLIS1  -     chr1:53506233-53734204 -  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLIS1  -     1p32.3   [Description]    (hg19-Feb_2009)
EnsemblGLIS1 - 1p32.3 [CytoView hg19]  GLIS1 - 1p32.3 [CytoView hg38]
Mapping of homologs : NCBIGLIS1 [Mapview hg19]  GLIS1 [Mapview hg38]
OMIM610378   
Gene and transcription
Genbank (Entrez)AK090634 AK093474 BC101799 BC104911 EU446680
RefSeq transcript (Entrez)NM_147193
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLIS1
Cluster EST : UnigeneHs.306691 [ NCBI ]
CGAP (NCI)Hs.306691
Alternative Splicing GalleryENSG00000174332
Gene ExpressionGLIS1 [ NCBI-GEO ]   GLIS1 [ EBI - ARRAY_EXPRESS ]   GLIS1 [ SEEK ]   GLIS1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLIS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)148979
GTEX Portal (Tissue expression)GLIS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NBF1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NBF1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NBF1
Splice isoforms : SwissVarQ8NBF1
PhosPhoSitePlusQ8NBF1
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)GLIS1    Znf_C2H2    Znf_C2H2-like    Znf_C2H2/integrase_DNA-bd   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)GLIS1
DMDM Disease mutations148979
Blocks (Seattle)GLIS1
SuperfamilyQ8NBF1
Human Protein AtlasENSG00000174332
Peptide AtlasQ8NBF1
HPRD13581
IPIIPI00168239   
Protein Interaction databases
DIP (DOE-UCLA)Q8NBF1
IntAct (EBI)Q8NBF1
FunCoupENSG00000174332
BioGRIDGLIS1
STRING (EMBL)GLIS1
ZODIACGLIS1
Ontologies - Pathways
QuickGOQ8NBF1
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  nucleus  transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  RNA polymerase II regulatory region sequence-specific DNA binding  transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  nucleus  transcription from RNA polymerase II promoter  positive regulation of transcription from RNA polymerase II promoter  metal ion binding  
NDEx NetworkGLIS1
Atlas of Cancer Signalling NetworkGLIS1
Wikipedia pathwaysGLIS1
Orthology - Evolution
OrthoDB148979
GeneTree (enSembl)ENSG00000174332
Phylogenetic Trees/Animal Genes : TreeFamGLIS1
HOVERGENQ8NBF1
HOGENOMQ8NBF1
Homologs : HomoloGeneGLIS1
Homology/Alignments : Family Browser (UCSC)GLIS1
Gene fusions - Rearrangements
Fusion: TCGAINADL GLIS1
Fusion: TCGAPAX8 GLIS1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLIS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLIS1
dbVarGLIS1
ClinVarGLIS1
1000_GenomesGLIS1 
Exome Variant ServerGLIS1
ExAC (Exome Aggregation Consortium)GLIS1 (select the gene name)
Genetic variants : HAPMAP148979
Genomic Variants (DGV)GLIS1 [DGVbeta]
DECIPHERGLIS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLIS1 
Mutations
ICGC Data PortalGLIS1 
TCGA Data PortalGLIS1 
Broad Tumor PortalGLIS1
OASIS PortalGLIS1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLIS1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLIS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLIS1
DgiDB (Drug Gene Interaction Database)GLIS1
DoCM (Curated mutations)GLIS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLIS1 (select a term)
intoGenGLIS1
Cancer3DGLIS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610378   
Orphanet
MedgenGLIS1
Genetic Testing Registry GLIS1
NextProtQ8NBF1 [Medical]
TSGene148979
GENETestsGLIS1
Target ValidationGLIS1
Huge Navigator GLIS1 [HugePedia]
snp3D : Map Gene to Disease148979
BioCentury BCIQGLIS1
ClinGenGLIS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD148979
Chemical/Pharm GKB GenePA134948186
Clinical trialGLIS1
Miscellaneous
canSAR (ICR)GLIS1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLIS1
EVEXGLIS1
GoPubMedGLIS1
iHOPGLIS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:16:15 CEST 2017
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