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GLOD4 (glyoxalase domain containing 4)

Identity

Alias_namesC17orf25
chromosome 17 open reading frame 25
Alias_symbol (synonym)CGI-150
HC71
Other alias
HGNC (Hugo) GLOD4
LocusID (NCBI) 51031
Atlas_Id 63822
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 759309 and ends at 782331 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABR (17p13.3) / GLOD4 (17p13.3)FCHSD2 (11q13.4) / GLOD4 (17p13.3)GLOD4 (17p13.3) / GLOD4 (17p13.3)
NUP160 (11p11.2) / GLOD4 (17p13.3)NXN (17p13.3) / GLOD4 (17p13.3)VPS53 (17p13.3) / GLOD4 (17p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLOD4   14111
Cards
Entrez_Gene (NCBI)GLOD4  51031  glyoxalase domain containing 4
AliasesC17orf25; CGI-150; HC71
GeneCards (Weizmann)GLOD4
Ensembl hg19 (Hinxton)ENSG00000167699 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000167699 [Gene_View]  chr17:759309-782331 [Contig_View]  GLOD4 [Vega]
ICGC DataPortalENSG00000167699
TCGA cBioPortalGLOD4
AceView (NCBI)GLOD4
Genatlas (Paris)GLOD4
WikiGenes51031
SOURCE (Princeton)GLOD4
Genetics Home Reference (NIH)GLOD4
Genomic and cartography
GoldenPath hg38 (UCSC)GLOD4  -     chr17:759309-782331 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLOD4  -     17p13.3   [Description]    (hg19-Feb_2009)
EnsemblGLOD4 - 17p13.3 [CytoView hg19]  GLOD4 - 17p13.3 [CytoView hg38]
Mapping of homologs : NCBIGLOD4 [Mapview hg19]  GLOD4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA721638 AF061730 AF151908 AF177342 AF177343
RefSeq transcript (Entrez)NM_016080
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLOD4
Cluster EST : UnigeneHs.595572 [ NCBI ]
CGAP (NCI)Hs.595572
Alternative Splicing GalleryENSG00000167699
Gene ExpressionGLOD4 [ NCBI-GEO ]   GLOD4 [ EBI - ARRAY_EXPRESS ]   GLOD4 [ SEEK ]   GLOD4 [ MEM ]
Gene Expression Viewer (FireBrowse)GLOD4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51031
GTEX Portal (Tissue expression)GLOD4
Human Protein AtlasENSG00000167699-GLOD4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9HC38   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9HC38  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9HC38
Splice isoforms : SwissVarQ9HC38
PhosPhoSitePlusQ9HC38
Domaine pattern : Prosite (Expaxy)VOC (PS51819)   
Domains : Interpro (EBI)Glyas_Bleomycin-R_OHBP_Dase   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)GLOD4
DMDM Disease mutations51031
Blocks (Seattle)GLOD4
PDB (SRS)3ZI1   
PDB (PDBSum)3ZI1   
PDB (IMB)3ZI1   
PDB (RSDB)3ZI1   
Structural Biology KnowledgeBase3ZI1   
SCOP (Structural Classification of Proteins)3ZI1   
CATH (Classification of proteins structures)3ZI1   
SuperfamilyQ9HC38
Human Protein Atlas [tissue]ENSG00000167699-GLOD4 [tissue]
Peptide AtlasQ9HC38
HPRD12678
IPIIPI00032575   IPI00745272   IPI00792035   IPI00922891   IPI00007102   
Protein Interaction databases
DIP (DOE-UCLA)Q9HC38
IntAct (EBI)Q9HC38
FunCoupENSG00000167699
BioGRIDGLOD4
STRING (EMBL)GLOD4
ZODIACGLOD4
Ontologies - Pathways
QuickGOQ9HC38
Ontology : AmiGOmitochondrion  cadherin binding  extracellular exosome  
Ontology : EGO-EBImitochondrion  cadherin binding  extracellular exosome  
NDEx NetworkGLOD4
Atlas of Cancer Signalling NetworkGLOD4
Wikipedia pathwaysGLOD4
Orthology - Evolution
OrthoDB51031
GeneTree (enSembl)ENSG00000167699
Phylogenetic Trees/Animal Genes : TreeFamGLOD4
HOVERGENQ9HC38
HOGENOMQ9HC38
Homologs : HomoloGeneGLOD4
Homology/Alignments : Family Browser (UCSC)GLOD4
Gene fusions - Rearrangements
Fusion: Tumor Portal GLOD4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLOD4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLOD4
dbVarGLOD4
ClinVarGLOD4
1000_GenomesGLOD4 
Exome Variant ServerGLOD4
ExAC (Exome Aggregation Consortium)ENSG00000167699
GNOMAD BrowserENSG00000167699
Genetic variants : HAPMAP51031
Genomic Variants (DGV)GLOD4 [DGVbeta]
DECIPHERGLOD4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLOD4 
Mutations
ICGC Data PortalGLOD4 
TCGA Data PortalGLOD4 
Broad Tumor PortalGLOD4
OASIS PortalGLOD4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLOD4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLOD4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLOD4
DgiDB (Drug Gene Interaction Database)GLOD4
DoCM (Curated mutations)GLOD4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLOD4 (select a term)
intoGenGLOD4
Cancer3DGLOD4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGLOD4
Genetic Testing Registry GLOD4
NextProtQ9HC38 [Medical]
TSGene51031
GENETestsGLOD4
Target ValidationGLOD4
Huge Navigator GLOD4 [HugePedia]
snp3D : Map Gene to Disease51031
BioCentury BCIQGLOD4
ClinGenGLOD4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51031
Chemical/Pharm GKB GenePA162389795
Clinical trialGLOD4
Miscellaneous
canSAR (ICR)GLOD4 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLOD4
EVEXGLOD4
GoPubMedGLOD4
iHOPGLOD4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:49:06 CET 2017

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