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GLT1D1 (glycosyltransferase 1 domain containing 1)

Identity

Alias_symbol (synonym)FLJ31978
Other alias-
HGNC (Hugo) GLT1D1
LocusID (NCBI) 144423
Atlas_Id 63830
Location 12q24.33  [Link to chromosome band 12q24]
Location_base_pair Starts at 128853434 and ends at 128984964 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ETNK1 (12p12.1) / GLT1D1 (12q24.33)SLC39A6 (18q12.2) / GLT1D1 (12q24.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLT1D1   26483
Cards
Entrez_Gene (NCBI)GLT1D1  144423  glycosyltransferase 1 domain containing 1
Aliases
GeneCards (Weizmann)GLT1D1
Ensembl hg19 (Hinxton)ENSG00000151948 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151948 [Gene_View]  chr12:128853434-128984964 [Contig_View]  GLT1D1 [Vega]
ICGC DataPortalENSG00000151948
TCGA cBioPortalGLT1D1
AceView (NCBI)GLT1D1
Genatlas (Paris)GLT1D1
WikiGenes144423
SOURCE (Princeton)GLT1D1
Genetics Home Reference (NIH)GLT1D1
Genomic and cartography
GoldenPath hg38 (UCSC)GLT1D1  -     chr12:128853434-128984964 +  12q24.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLT1D1  -     12q24.33   [Description]    (hg19-Feb_2009)
EnsemblGLT1D1 - 12q24.33 [CytoView hg19]  GLT1D1 - 12q24.33 [CytoView hg38]
Mapping of homologs : NCBIGLT1D1 [Mapview hg19]  GLT1D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK056540 AK295333 AK295454 BC033953 BC043528
RefSeq transcript (Entrez)NM_144669
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLT1D1
Cluster EST : UnigeneHs.655668 [ NCBI ]
CGAP (NCI)Hs.655668
Alternative Splicing GalleryENSG00000151948
Gene ExpressionGLT1D1 [ NCBI-GEO ]   GLT1D1 [ EBI - ARRAY_EXPRESS ]   GLT1D1 [ SEEK ]   GLT1D1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLT1D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)144423
GTEX Portal (Tissue expression)GLT1D1
Human Protein AtlasENSG00000151948-GLT1D1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96MS3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96MS3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96MS3
Splice isoforms : SwissVarQ96MS3
Catalytic activity : Enzyme2.4.-.- [ Enzyme-Expasy ]   2.4.-.-2.4.-.- [ IntEnz-EBI ]   2.4.-.- [ BRENDA ]   2.4.-.- [ KEGG ]   
PhosPhoSitePlusQ96MS3
Domains : Interpro (EBI)Glyco_trans_1   
Domain families : Pfam (Sanger)Glycos_transf_1 (PF00534)   
Domain families : Pfam (NCBI)pfam00534   
Conserved Domain (NCBI)GLT1D1
DMDM Disease mutations144423
Blocks (Seattle)GLT1D1
SuperfamilyQ96MS3
Human Protein Atlas [tissue]ENSG00000151948-GLT1D1 [tissue]
Peptide AtlasQ96MS3
HPRD08115
IPIIPI00877033   IPI00043331   IPI00793315   IPI01011989   IPI00911119   
Protein Interaction databases
DIP (DOE-UCLA)Q96MS3
IntAct (EBI)Q96MS3
FunCoupENSG00000151948
BioGRIDGLT1D1
STRING (EMBL)GLT1D1
ZODIACGLT1D1
Ontologies - Pathways
QuickGOQ96MS3
Ontology : AmiGOextracellular region  cytosol  transferase activity, transferring glycosyl groups  
Ontology : EGO-EBIextracellular region  cytosol  transferase activity, transferring glycosyl groups  
NDEx NetworkGLT1D1
Atlas of Cancer Signalling NetworkGLT1D1
Wikipedia pathwaysGLT1D1
Orthology - Evolution
OrthoDB144423
GeneTree (enSembl)ENSG00000151948
Phylogenetic Trees/Animal Genes : TreeFamGLT1D1
HOVERGENQ96MS3
HOGENOMQ96MS3
Homologs : HomoloGeneGLT1D1
Homology/Alignments : Family Browser (UCSC)GLT1D1
Gene fusions - Rearrangements
Fusion: Tumor Portal GLT1D1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLT1D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLT1D1
dbVarGLT1D1
ClinVarGLT1D1
1000_GenomesGLT1D1 
Exome Variant ServerGLT1D1
ExAC (Exome Aggregation Consortium)ENSG00000151948
GNOMAD BrowserENSG00000151948
Genetic variants : HAPMAP144423
Genomic Variants (DGV)GLT1D1 [DGVbeta]
DECIPHERGLT1D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLT1D1 
Mutations
ICGC Data PortalGLT1D1 
TCGA Data PortalGLT1D1 
Broad Tumor PortalGLT1D1
OASIS PortalGLT1D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLT1D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLT1D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLT1D1
DgiDB (Drug Gene Interaction Database)GLT1D1
DoCM (Curated mutations)GLT1D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLT1D1 (select a term)
intoGenGLT1D1
Cancer3DGLT1D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGLT1D1
Genetic Testing Registry GLT1D1
NextProtQ96MS3 [Medical]
TSGene144423
GENETestsGLT1D1
Target ValidationGLT1D1
Huge Navigator GLT1D1 [HugePedia]
snp3D : Map Gene to Disease144423
BioCentury BCIQGLT1D1
ClinGenGLT1D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD144423
Chemical/Pharm GKB GenePA128394758
Clinical trialGLT1D1
Miscellaneous
canSAR (ICR)GLT1D1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLT1D1
EVEXGLT1D1
GoPubMedGLT1D1
iHOPGLT1D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:49:07 CET 2017

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