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GLT6D1 (glycosyltransferase 6 domain containing 1)

Identity

Alias_namesGLTDC1
galactosyltransferase family 6 domain containing 1
Other aliasGT6M7
HGNC (Hugo) GLT6D1
LocusID (NCBI) 360203
Atlas_Id 63831
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 135623656 and ends at 135639540 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLT6D1   23671
Cards
Entrez_Gene (NCBI)GLT6D1  360203  glycosyltransferase 6 domain containing 1
AliasesGLTDC1; GT6M7
GeneCards (Weizmann)GLT6D1
Ensembl hg19 (Hinxton)ENSG00000204007 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204007 [Gene_View]  chr9:135623656-135639540 [Contig_View]  GLT6D1 [Vega]
ICGC DataPortalENSG00000204007
TCGA cBioPortalGLT6D1
AceView (NCBI)GLT6D1
Genatlas (Paris)GLT6D1
WikiGenes360203
SOURCE (Princeton)GLT6D1
Genetics Home Reference (NIH)GLT6D1
Genomic and cartography
GoldenPath hg38 (UCSC)GLT6D1  -     chr9:135623656-135639540 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLT6D1  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblGLT6D1 - 9q34.3 [CytoView hg19]  GLT6D1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIGLT6D1 [Mapview hg19]  GLT6D1 [Mapview hg38]
OMIM613699   
Gene and transcription
Genbank (Entrez)AY336054 BC148647
RefSeq transcript (Entrez)NM_182974
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLT6D1
Cluster EST : UnigeneHs.522491 [ NCBI ]
CGAP (NCI)Hs.522491
Alternative Splicing GalleryENSG00000204007
Gene ExpressionGLT6D1 [ NCBI-GEO ]   GLT6D1 [ EBI - ARRAY_EXPRESS ]   GLT6D1 [ SEEK ]   GLT6D1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLT6D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)360203
GTEX Portal (Tissue expression)GLT6D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z4J2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z4J2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z4J2
Splice isoforms : SwissVarQ7Z4J2
Catalytic activity : Enzyme2.4.1.- [ Enzyme-Expasy ]   2.4.1.-2.4.1.- [ IntEnz-EBI ]   2.4.1.- [ BRENDA ]   2.4.1.- [ KEGG ]   
PhosPhoSitePlusQ7Z4J2
Domains : Interpro (EBI)Glyco_trans_6    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_6 (PF03414)   
Domain families : Pfam (NCBI)pfam03414   
Conserved Domain (NCBI)GLT6D1
DMDM Disease mutations360203
Blocks (Seattle)GLT6D1
SuperfamilyQ7Z4J2
Human Protein AtlasENSG00000204007
Peptide AtlasQ7Z4J2
HPRD13584
IPIIPI00375986   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z4J2
IntAct (EBI)Q7Z4J2
FunCoupENSG00000204007
BioGRIDGLT6D1
STRING (EMBL)GLT6D1
ZODIACGLT6D1
Ontologies - Pathways
QuickGOQ7Z4J2
Ontology : AmiGOGolgi apparatus  carbohydrate metabolic process  glycolipid biosynthetic process  integral component of membrane  transferase activity, transferring glycosyl groups  transferase activity, transferring hexosyl groups  lipid glycosylation  vesicle  
Ontology : EGO-EBIGolgi apparatus  carbohydrate metabolic process  glycolipid biosynthetic process  integral component of membrane  transferase activity, transferring glycosyl groups  transferase activity, transferring hexosyl groups  lipid glycosylation  vesicle  
NDEx NetworkGLT6D1
Atlas of Cancer Signalling NetworkGLT6D1
Wikipedia pathwaysGLT6D1
Orthology - Evolution
OrthoDB360203
GeneTree (enSembl)ENSG00000204007
Phylogenetic Trees/Animal Genes : TreeFamGLT6D1
HOVERGENQ7Z4J2
HOGENOMQ7Z4J2
Homologs : HomoloGeneGLT6D1
Homology/Alignments : Family Browser (UCSC)GLT6D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLT6D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLT6D1
dbVarGLT6D1
ClinVarGLT6D1
1000_GenomesGLT6D1 
Exome Variant ServerGLT6D1
ExAC (Exome Aggregation Consortium)GLT6D1 (select the gene name)
Genetic variants : HAPMAP360203
Genomic Variants (DGV)GLT6D1 [DGVbeta]
DECIPHERGLT6D1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLT6D1 
Mutations
ICGC Data PortalGLT6D1 
TCGA Data PortalGLT6D1 
Broad Tumor PortalGLT6D1
OASIS PortalGLT6D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLT6D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLT6D1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLT6D1
DgiDB (Drug Gene Interaction Database)GLT6D1
DoCM (Curated mutations)GLT6D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLT6D1 (select a term)
intoGenGLT6D1
Cancer3DGLT6D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613699   
Orphanet
MedgenGLT6D1
Genetic Testing Registry GLT6D1
NextProtQ7Z4J2 [Medical]
TSGene360203
GENETestsGLT6D1
Huge Navigator GLT6D1 [HugePedia]
snp3D : Map Gene to Disease360203
BioCentury BCIQGLT6D1
ClinGenGLT6D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD360203
Chemical/Pharm GKB GenePA134906610
Clinical trialGLT6D1
Miscellaneous
canSAR (ICR)GLT6D1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLT6D1
EVEXGLT6D1
GoPubMedGLT6D1
iHOPGLT6D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:13:51 CEST 2017

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