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GLT8D1 (glycosyltransferase 8 domain containing 1)

Identity

Alias_symbol (synonym)AD-017
FLJ14611
Other aliasMSTP139
HGNC (Hugo) GLT8D1
LocusID (NCBI) 55830
Atlas_Id 53196
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 52728500 and ends at 52740099 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CLDN4 (7q11.23) / GLT8D1 (3p21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLT8D1   24870
Cards
Entrez_Gene (NCBI)GLT8D1  55830  glycosyltransferase 8 domain containing 1
AliasesAD-017; MSTP139
GeneCards (Weizmann)GLT8D1
Ensembl hg19 (Hinxton)ENSG00000016864 [Gene_View]  chr3:52728500-52740099 [Contig_View]  GLT8D1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000016864 [Gene_View]  chr3:52728500-52740099 [Contig_View]  GLT8D1 [Vega]
ICGC DataPortalENSG00000016864
TCGA cBioPortalGLT8D1
AceView (NCBI)GLT8D1
Genatlas (Paris)GLT8D1
WikiGenes55830
SOURCE (Princeton)GLT8D1
Genetics Home Reference (NIH)GLT8D1
Genomic and cartography
GoldenPath hg19 (UCSC)GLT8D1  -     chr3:52728500-52740099 -  3p21.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GLT8D1  -     3p21.1   [Description]    (hg38-Dec_2013)
EnsemblGLT8D1 - 3p21.1 [CytoView hg19]  GLT8D1 - 3p21.1 [CytoView hg38]
Mapping of homologs : NCBIGLT8D1 [Mapview hg19]  GLT8D1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF157318 AF175227 AF176777 AJ271710 AK027517
RefSeq transcript (Entrez)NM_001010983 NM_001278280 NM_001278281 NM_018446 NM_152932
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)GLT8D1
Cluster EST : UnigeneHs.297304 [ NCBI ]
CGAP (NCI)Hs.297304
Alternative Splicing GalleryENSG00000016864
Gene ExpressionGLT8D1 [ NCBI-GEO ]   GLT8D1 [ EBI - ARRAY_EXPRESS ]   GLT8D1 [ SEEK ]   GLT8D1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLT8D1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55830
GTEX Portal (Tissue expression)GLT8D1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68CQ7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68CQ7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68CQ7
Splice isoforms : SwissVarQ68CQ7
PhosPhoSitePlusQ68CQ7
Domains : Interpro (EBI)Glyco_trans_8    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_8 (PF01501)   
Domain families : Pfam (NCBI)pfam01501   
Conserved Domain (NCBI)GLT8D1
DMDM Disease mutations55830
Blocks (Seattle)GLT8D1
SuperfamilyQ68CQ7
Human Protein AtlasENSG00000016864
Peptide AtlasQ68CQ7
HPRD12423
IPIIPI00020470   IPI00384012   IPI00385085   IPI00945559   IPI00947341   IPI00945723   IPI00945415   IPI00944979   IPI00945118   IPI00947497   
Protein Interaction databases
DIP (DOE-UCLA)Q68CQ7
IntAct (EBI)Q68CQ7
FunCoupENSG00000016864
BioGRIDGLT8D1
STRING (EMBL)GLT8D1
ZODIACGLT8D1
Ontologies - Pathways
QuickGOQ68CQ7
Ontology : AmiGOpolysaccharide biosynthetic process  Golgi apparatus  membrane  integral component of membrane  transferase activity, transferring glycosyl groups  
Ontology : EGO-EBIpolysaccharide biosynthetic process  Golgi apparatus  membrane  integral component of membrane  transferase activity, transferring glycosyl groups  
NDEx NetworkGLT8D1
Atlas of Cancer Signalling NetworkGLT8D1
Wikipedia pathwaysGLT8D1
Orthology - Evolution
OrthoDB55830
GeneTree (enSembl)ENSG00000016864
Phylogenetic Trees/Animal Genes : TreeFamGLT8D1
HOVERGENQ68CQ7
HOGENOMQ68CQ7
Homologs : HomoloGeneGLT8D1
Homology/Alignments : Family Browser (UCSC)GLT8D1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLT8D1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLT8D1
dbVarGLT8D1
ClinVarGLT8D1
1000_GenomesGLT8D1 
Exome Variant ServerGLT8D1
ExAC (Exome Aggregation Consortium)GLT8D1 (select the gene name)
Genetic variants : HAPMAP55830
Genomic Variants (DGV)GLT8D1 [DGVbeta]
DECIPHER (Syndromes)3:52728500-52740099  ENSG00000016864
CONAN: Copy Number AnalysisGLT8D1 
Mutations
ICGC Data PortalGLT8D1 
TCGA Data PortalGLT8D1 
Broad Tumor PortalGLT8D1
OASIS PortalGLT8D1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLT8D1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLT8D1
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch GLT8D1
DgiDB (Drug Gene Interaction Database)GLT8D1
DoCM (Curated mutations)GLT8D1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLT8D1 (select a term)
intoGenGLT8D1
Cancer3DGLT8D1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGLT8D1
Genetic Testing Registry GLT8D1
NextProtQ68CQ7 [Medical]
TSGene55830
GENETestsGLT8D1
Huge Navigator GLT8D1 [HugePedia]
snp3D : Map Gene to Disease55830
BioCentury BCIQGLT8D1
ClinGenGLT8D1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55830
Chemical/Pharm GKB GenePA134947079
Clinical trialGLT8D1
Miscellaneous
canSAR (ICR)GLT8D1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLT8D1
EVEXGLT8D1
GoPubMedGLT8D1
iHOPGLT8D1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:02:33 CEST 2017

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