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GLT8D2 (glycosyltransferase 8 domain containing 2)

Identity

Alias_symbol (synonym)FLJ31494
Other alias-
HGNC (Hugo) GLT8D2
LocusID (NCBI) 83468
Atlas_Id 63832
Location 12q23.3  [Link to chromosome band 12q23]
Location_base_pair Starts at 104382765 and ends at 104443915 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
C12orf73 (12q23.3) / GLT8D2 (12q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLT8D2   24890
Cards
Entrez_Gene (NCBI)GLT8D2  83468  glycosyltransferase 8 domain containing 2
Aliases
GeneCards (Weizmann)GLT8D2
Ensembl hg19 (Hinxton)ENSG00000120820 [Gene_View]  chr12:104382765-104443915 [Contig_View]  GLT8D2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000120820 [Gene_View]  chr12:104382765-104443915 [Contig_View]  GLT8D2 [Vega]
ICGC DataPortalENSG00000120820
TCGA cBioPortalGLT8D2
AceView (NCBI)GLT8D2
Genatlas (Paris)GLT8D2
WikiGenes83468
SOURCE (Princeton)GLT8D2
Genetics Home Reference (NIH)GLT8D2
Genomic and cartography
GoldenPath hg19 (UCSC)GLT8D2  -     chr12:104382765-104443915 -  12q23.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GLT8D2  -     12q23.3   [Description]    (hg38-Dec_2013)
EnsemblGLT8D2 - 12q23.3 [CytoView hg19]  GLT8D2 - 12q23.3 [CytoView hg38]
Mapping of homologs : NCBIGLT8D2 [Mapview hg19]  GLT8D2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ271711 AK027310 AK056056 AY358763 BC022343
RefSeq transcript (Entrez)NM_031302
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)GLT8D2
Cluster EST : UnigeneHs.631650 [ NCBI ]
CGAP (NCI)Hs.631650
Alternative Splicing GalleryENSG00000120820
Gene ExpressionGLT8D2 [ NCBI-GEO ]   GLT8D2 [ EBI - ARRAY_EXPRESS ]   GLT8D2 [ SEEK ]   GLT8D2 [ MEM ]
Gene Expression Viewer (FireBrowse)GLT8D2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83468
GTEX Portal (Tissue expression)GLT8D2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H1C3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H1C3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H1C3
Splice isoforms : SwissVarQ9H1C3
PhosPhoSitePlusQ9H1C3
Domains : Interpro (EBI)Glyco_trans_8    Nucleotide-diphossugar_trans   
Domain families : Pfam (Sanger)Glyco_transf_8 (PF01501)   
Domain families : Pfam (NCBI)pfam01501   
Conserved Domain (NCBI)GLT8D2
DMDM Disease mutations83468
Blocks (Seattle)GLT8D2
SuperfamilyQ9H1C3
Human Protein AtlasENSG00000120820
Peptide AtlasQ9H1C3
HPRD14260
IPIIPI00010445   IPI01020992   IPI01020674   
Protein Interaction databases
DIP (DOE-UCLA)Q9H1C3
IntAct (EBI)Q9H1C3
FunCoupENSG00000120820
BioGRIDGLT8D2
STRING (EMBL)GLT8D2
ZODIACGLT8D2
Ontologies - Pathways
QuickGOQ9H1C3
Ontology : AmiGOmetabolic process  integral component of membrane  transferase activity, transferring glycosyl groups  
Ontology : EGO-EBImetabolic process  integral component of membrane  transferase activity, transferring glycosyl groups  
NDEx NetworkGLT8D2
Atlas of Cancer Signalling NetworkGLT8D2
Wikipedia pathwaysGLT8D2
Orthology - Evolution
OrthoDB83468
GeneTree (enSembl)ENSG00000120820
Phylogenetic Trees/Animal Genes : TreeFamGLT8D2
HOVERGENQ9H1C3
HOGENOMQ9H1C3
Homologs : HomoloGeneGLT8D2
Homology/Alignments : Family Browser (UCSC)GLT8D2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLT8D2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLT8D2
dbVarGLT8D2
ClinVarGLT8D2
1000_GenomesGLT8D2 
Exome Variant ServerGLT8D2
ExAC (Exome Aggregation Consortium)GLT8D2 (select the gene name)
Genetic variants : HAPMAP83468
Genomic Variants (DGV)GLT8D2 [DGVbeta]
DECIPHER (Syndromes)12:104382765-104443915  ENSG00000120820
CONAN: Copy Number AnalysisGLT8D2 
Mutations
ICGC Data PortalGLT8D2 
TCGA Data PortalGLT8D2 
Broad Tumor PortalGLT8D2
OASIS PortalGLT8D2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLT8D2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLT8D2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLT8D2
DgiDB (Drug Gene Interaction Database)GLT8D2
DoCM (Curated mutations)GLT8D2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLT8D2 (select a term)
intoGenGLT8D2
Cancer3DGLT8D2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGLT8D2
Genetic Testing Registry GLT8D2
NextProtQ9H1C3 [Medical]
TSGene83468
GENETestsGLT8D2
Huge Navigator GLT8D2 [HugePedia]
snp3D : Map Gene to Disease83468
BioCentury BCIQGLT8D2
ClinGenGLT8D2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83468
Chemical/Pharm GKB GenePA134939919
Clinical trialGLT8D2
Miscellaneous
canSAR (ICR)GLT8D2 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLT8D2
EVEXGLT8D2
GoPubMedGLT8D2
iHOPGLT8D2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:06:14 CET 2017

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