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GLTP (glycolipid transfer protein)

Identity

Other alias-
HGNC (Hugo) GLTP
LocusID (NCBI) 51228
Atlas_Id 63833
Location 12q24.11  [Link to chromosome band 12q24]
Location_base_pair Starts at 109850943 and ends at 109880488 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CELSR1 (22q13.31) / GLTP (12q24.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLTP   24867
Cards
Entrez_Gene (NCBI)GLTP  51228  glycolipid transfer protein
Aliases
GeneCards (Weizmann)GLTP
Ensembl hg19 (Hinxton)ENSG00000139433 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000139433 [Gene_View]  chr12:109850943-109880488 [Contig_View]  GLTP [Vega]
ICGC DataPortalENSG00000139433
TCGA cBioPortalGLTP
AceView (NCBI)GLTP
Genatlas (Paris)GLTP
WikiGenes51228
SOURCE (Princeton)GLTP
Genetics Home Reference (NIH)GLTP
Genomic and cartography
GoldenPath hg38 (UCSC)GLTP  -     chr12:109850943-109880488 -  12q24.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLTP  -     12q24.11   [Description]    (hg19-Feb_2009)
EnsemblGLTP - 12q24.11 [CytoView hg19]  GLTP - 12q24.11 [CytoView hg38]
Mapping of homologs : NCBIGLTP [Mapview hg19]  GLTP [Mapview hg38]
OMIM608949   
Gene and transcription
Genbank (Entrez)AF209704 AK313457 AY372530 AY372531 AY372532
RefSeq transcript (Entrez)NM_016433
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLTP
Cluster EST : UnigeneHs.381256 [ NCBI ]
CGAP (NCI)Hs.381256
Alternative Splicing GalleryENSG00000139433
Gene ExpressionGLTP [ NCBI-GEO ]   GLTP [ EBI - ARRAY_EXPRESS ]   GLTP [ SEEK ]   GLTP [ MEM ]
Gene Expression Viewer (FireBrowse)GLTP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51228
GTEX Portal (Tissue expression)GLTP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZD2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZD2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZD2
Splice isoforms : SwissVarQ9NZD2
PhosPhoSitePlusQ9NZD2
Domains : Interpro (EBI)Glycolipid_transfer_prot_dom   
Domain families : Pfam (Sanger)GLTP (PF08718)   
Domain families : Pfam (NCBI)pfam08718   
Conserved Domain (NCBI)GLTP
DMDM Disease mutations51228
Blocks (Seattle)GLTP
PDB (SRS)1SWX    1SX6    2EUK    2EUM    2EVD    2EVL    2EVS    2EVT    3RIC    3RWV    3RZN    3S0I    3S0K    4GH0    4GHP    4GHS    4GIX    4GJQ    4GVT    4GXD    4GXG    4H2Z   
PDB (PDBSum)1SWX    1SX6    2EUK    2EUM    2EVD    2EVL    2EVS    2EVT    3RIC    3RWV    3RZN    3S0I    3S0K    4GH0    4GHP    4GHS    4GIX    4GJQ    4GVT    4GXD    4GXG    4H2Z   
PDB (IMB)1SWX    1SX6    2EUK    2EUM    2EVD    2EVL    2EVS    2EVT    3RIC    3RWV    3RZN    3S0I    3S0K    4GH0    4GHP    4GHS    4GIX    4GJQ    4GVT    4GXD    4GXG    4H2Z   
PDB (RSDB)1SWX    1SX6    2EUK    2EUM    2EVD    2EVL    2EVS    2EVT    3RIC    3RWV    3RZN    3S0I    3S0K    4GH0    4GHP    4GHS    4GIX    4GJQ    4GVT    4GXD    4GXG    4H2Z   
Structural Biology KnowledgeBase1SWX    1SX6    2EUK    2EUM    2EVD    2EVL    2EVS    2EVT    3RIC    3RWV    3RZN    3S0I    3S0K    4GH0    4GHP    4GHS    4GIX    4GJQ    4GVT    4GXD    4GXG    4H2Z   
SCOP (Structural Classification of Proteins)1SWX    1SX6    2EUK    2EUM    2EVD    2EVL    2EVS    2EVT    3RIC    3RWV    3RZN    3S0I    3S0K    4GH0    4GHP    4GHS    4GIX    4GJQ    4GVT    4GXD    4GXG    4H2Z   
CATH (Classification of proteins structures)1SWX    1SX6    2EUK    2EUM    2EVD    2EVL    2EVS    2EVT    3RIC    3RWV    3RZN    3S0I    3S0K    4GH0    4GHP    4GHS    4GIX    4GJQ    4GVT    4GXD    4GXG    4H2Z   
SuperfamilyQ9NZD2
Human Protein AtlasENSG00000139433
Peptide AtlasQ9NZD2
HPRD16409
IPIIPI00184363   IPI01015980   IPI01014464   IPI01013977   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZD2
IntAct (EBI)Q9NZD2
FunCoupENSG00000139433
BioGRIDGLTP
STRING (EMBL)GLTP
ZODIACGLTP
Ontologies - Pathways
QuickGOQ9NZD2
Ontology : AmiGOprotein binding  cytosol  cytosol  glycosphingolipid metabolic process  lipid binding  membrane  glycolipid transporter activity  glycolipid transporter activity  glycolipid transport  glycolipid binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  cytosol  cytosol  glycosphingolipid metabolic process  lipid binding  membrane  glycolipid transporter activity  glycolipid transporter activity  glycolipid transport  glycolipid binding  extracellular exosome  
NDEx NetworkGLTP
Atlas of Cancer Signalling NetworkGLTP
Wikipedia pathwaysGLTP
Orthology - Evolution
OrthoDB51228
GeneTree (enSembl)ENSG00000139433
Phylogenetic Trees/Animal Genes : TreeFamGLTP
HOVERGENQ9NZD2
HOGENOMQ9NZD2
Homologs : HomoloGeneGLTP
Homology/Alignments : Family Browser (UCSC)GLTP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLTP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLTP
dbVarGLTP
ClinVarGLTP
1000_GenomesGLTP 
Exome Variant ServerGLTP
ExAC (Exome Aggregation Consortium)GLTP (select the gene name)
Genetic variants : HAPMAP51228
Genomic Variants (DGV)GLTP [DGVbeta]
DECIPHERGLTP [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLTP 
Mutations
ICGC Data PortalGLTP 
TCGA Data PortalGLTP 
Broad Tumor PortalGLTP
OASIS PortalGLTP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLTP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLTP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLTP
DgiDB (Drug Gene Interaction Database)GLTP
DoCM (Curated mutations)GLTP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLTP (select a term)
intoGenGLTP
Cancer3DGLTP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608949   
Orphanet
MedgenGLTP
Genetic Testing Registry GLTP
NextProtQ9NZD2 [Medical]
TSGene51228
GENETestsGLTP
Target ValidationGLTP
Huge Navigator GLTP [HugePedia]
snp3D : Map Gene to Disease51228
BioCentury BCIQGLTP
ClinGenGLTP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51228
Chemical/Pharm GKB GenePA142671729
Clinical trialGLTP
Miscellaneous
canSAR (ICR)GLTP (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLTP
EVEXGLTP
GoPubMedGLTP
iHOPGLTP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:28 CEST 2017

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