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GLTPD2 (glycolipid transfer protein domain containing 2)

Identity

Other alias-
HGNC (Hugo) GLTPD2
LocusID (NCBI) 388323
Atlas_Id 63834
Location 17p13.2  [Link to chromosome band 17p13]
Location_base_pair Starts at 4788959 and ends at 4790589 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLTPD2   33756
Cards
Entrez_Gene (NCBI)GLTPD2  388323  glycolipid transfer protein domain containing 2
Aliases
GeneCards (Weizmann)GLTPD2
Ensembl hg19 (Hinxton)ENSG00000182327 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182327 [Gene_View]  chr17:4788959-4790589 [Contig_View]  GLTPD2 [Vega]
ICGC DataPortalENSG00000182327
TCGA cBioPortalGLTPD2
AceView (NCBI)GLTPD2
Genatlas (Paris)GLTPD2
WikiGenes388323
SOURCE (Princeton)GLTPD2
Genetics Home Reference (NIH)GLTPD2
Genomic and cartography
GoldenPath hg38 (UCSC)GLTPD2  -     chr17:4788959-4790589 +  17p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLTPD2  -     17p13.2   [Description]    (hg19-Feb_2009)
EnsemblGLTPD2 - 17p13.2 [CytoView hg19]  GLTPD2 - 17p13.2 [CytoView hg38]
Mapping of homologs : NCBIGLTPD2 [Mapview hg19]  GLTPD2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC029290 BC150536 CD365791
RefSeq transcript (Entrez)NM_001014985
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLTPD2
Cluster EST : UnigeneHs.131035 [ NCBI ]
CGAP (NCI)Hs.131035
Alternative Splicing GalleryENSG00000182327
Gene ExpressionGLTPD2 [ NCBI-GEO ]   GLTPD2 [ EBI - ARRAY_EXPRESS ]   GLTPD2 [ SEEK ]   GLTPD2 [ MEM ]
Gene Expression Viewer (FireBrowse)GLTPD2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388323
GTEX Portal (Tissue expression)GLTPD2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NH11   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NH11  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NH11
Splice isoforms : SwissVarA6NH11
PhosPhoSitePlusA6NH11
Domains : Interpro (EBI)Glycolipid_transfer_prot_dom   
Domain families : Pfam (Sanger)GLTP (PF08718)   
Domain families : Pfam (NCBI)pfam08718   
Conserved Domain (NCBI)GLTPD2
DMDM Disease mutations388323
Blocks (Seattle)GLTPD2
SuperfamilyA6NH11
Human Protein AtlasENSG00000182327
Peptide AtlasA6NH11
HPRD18609
IPIIPI00373867   
Protein Interaction databases
DIP (DOE-UCLA)A6NH11
IntAct (EBI)A6NH11
FunCoupENSG00000182327
BioGRIDGLTPD2
STRING (EMBL)GLTPD2
ZODIACGLTPD2
Ontologies - Pathways
QuickGOA6NH11
Ontology : AmiGOcytoplasm  glycolipid transporter activity  glycolipid transport  glycolipid binding  
Ontology : EGO-EBIcytoplasm  glycolipid transporter activity  glycolipid transport  glycolipid binding  
NDEx NetworkGLTPD2
Atlas of Cancer Signalling NetworkGLTPD2
Wikipedia pathwaysGLTPD2
Orthology - Evolution
OrthoDB388323
GeneTree (enSembl)ENSG00000182327
Phylogenetic Trees/Animal Genes : TreeFamGLTPD2
HOVERGENA6NH11
HOGENOMA6NH11
Homologs : HomoloGeneGLTPD2
Homology/Alignments : Family Browser (UCSC)GLTPD2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLTPD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLTPD2
dbVarGLTPD2
ClinVarGLTPD2
1000_GenomesGLTPD2 
Exome Variant ServerGLTPD2
ExAC (Exome Aggregation Consortium)GLTPD2 (select the gene name)
Genetic variants : HAPMAP388323
Genomic Variants (DGV)GLTPD2 [DGVbeta]
DECIPHERGLTPD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLTPD2 
Mutations
ICGC Data PortalGLTPD2 
TCGA Data PortalGLTPD2 
Broad Tumor PortalGLTPD2
OASIS PortalGLTPD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLTPD2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLTPD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLTPD2
DgiDB (Drug Gene Interaction Database)GLTPD2
DoCM (Curated mutations)GLTPD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLTPD2 (select a term)
intoGenGLTPD2
Cancer3DGLTPD2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenGLTPD2
Genetic Testing Registry GLTPD2
NextProtA6NH11 [Medical]
TSGene388323
GENETestsGLTPD2
Huge Navigator GLTPD2 [HugePedia]
snp3D : Map Gene to Disease388323
BioCentury BCIQGLTPD2
ClinGenGLTPD2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388323
Chemical/Pharm GKB GenePA162389864
Clinical trialGLTPD2
Miscellaneous
canSAR (ICR)GLTPD2 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLTPD2
EVEXGLTPD2
GoPubMedGLTPD2
iHOPGLTPD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 11:13:51 CEST 2017

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