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GLTSCR1 (glioma tumor suppressor candidate region gene 1)

Identity

Other alias-
HGNC (Hugo) GLTSCR1
LocusID (NCBI) 29998
Atlas_Id 40722
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 48111453 and ends at 48206534 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CTIF (18q21.1) / GLTSCR1 (19q13.33)GLTSCR1 (19q13.33) / C5AR1 (19q13.32)GLTSCR1 (19q13.33) / GLTSCR1 (19q13.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLTSCR1   4332
Cards
Entrez_Gene (NCBI)GLTSCR1  29998  glioma tumor suppressor candidate region gene 1
Aliases
GeneCards (Weizmann)GLTSCR1
Ensembl hg19 (Hinxton)ENSG00000063169 [Gene_View]  chr19:48111453-48206534 [Contig_View]  GLTSCR1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000063169 [Gene_View]  chr19:48111453-48206534 [Contig_View]  GLTSCR1 [Vega]
ICGC DataPortalENSG00000063169
TCGA cBioPortalGLTSCR1
AceView (NCBI)GLTSCR1
Genatlas (Paris)GLTSCR1
WikiGenes29998
SOURCE (Princeton)GLTSCR1
Genetics Home Reference (NIH)GLTSCR1
Genomic and cartography
GoldenPath hg19 (UCSC)GLTSCR1  -     chr19:48111453-48206534 +  19q13.33   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)GLTSCR1  -     19q13.33   [Description]    (hg38-Dec_2013)
EnsemblGLTSCR1 - 19q13.33 [CytoView hg19]  GLTSCR1 - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIGLTSCR1 [Mapview hg19]  GLTSCR1 [Mapview hg38]
OMIM605690   
Gene and transcription
Genbank (Entrez)AA961479 AA994408 AF182077 AK097153 BC032065
RefSeq transcript (Entrez)NM_015711
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)GLTSCR1
Cluster EST : UnigeneHs.97244 [ NCBI ]
CGAP (NCI)Hs.97244
Alternative Splicing GalleryENSG00000063169
Gene ExpressionGLTSCR1 [ NCBI-GEO ]   GLTSCR1 [ EBI - ARRAY_EXPRESS ]   GLTSCR1 [ SEEK ]   GLTSCR1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLTSCR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29998
GTEX Portal (Tissue expression)GLTSCR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZM4
Splice isoforms : SwissVarQ9NZM4
PhosPhoSitePlusQ9NZM4
Domains : Interpro (EBI)GSCR1_dom   
Domain families : Pfam (Sanger)GLTSCR1 (PF15249)   
Domain families : Pfam (NCBI)pfam15249   
Conserved Domain (NCBI)GLTSCR1
DMDM Disease mutations29998
Blocks (Seattle)GLTSCR1
SuperfamilyQ9NZM4
Human Protein AtlasENSG00000063169
Peptide AtlasQ9NZM4
HPRD09296
IPIIPI00024568   IPI00873498   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZM4
IntAct (EBI)Q9NZM4
FunCoupENSG00000063169
BioGRIDGLTSCR1
STRING (EMBL)GLTSCR1
ZODIACGLTSCR1
Ontologies - Pathways
QuickGOQ9NZM4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkGLTSCR1
Atlas of Cancer Signalling NetworkGLTSCR1
Wikipedia pathwaysGLTSCR1
Orthology - Evolution
OrthoDB29998
GeneTree (enSembl)ENSG00000063169
Phylogenetic Trees/Animal Genes : TreeFamGLTSCR1
HOVERGENQ9NZM4
HOGENOMQ9NZM4
Homologs : HomoloGeneGLTSCR1
Homology/Alignments : Family Browser (UCSC)GLTSCR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLTSCR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLTSCR1
dbVarGLTSCR1
ClinVarGLTSCR1
1000_GenomesGLTSCR1 
Exome Variant ServerGLTSCR1
ExAC (Exome Aggregation Consortium)GLTSCR1 (select the gene name)
Genetic variants : HAPMAP29998
Genomic Variants (DGV)GLTSCR1 [DGVbeta]
DECIPHER (Syndromes)19:48111453-48206534  ENSG00000063169
CONAN: Copy Number AnalysisGLTSCR1 
Mutations
ICGC Data PortalGLTSCR1 
TCGA Data PortalGLTSCR1 
Broad Tumor PortalGLTSCR1
OASIS PortalGLTSCR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLTSCR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLTSCR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLTSCR1
DgiDB (Drug Gene Interaction Database)GLTSCR1
DoCM (Curated mutations)GLTSCR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLTSCR1 (select a term)
intoGenGLTSCR1
Cancer3DGLTSCR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605690   
Orphanet
MedgenGLTSCR1
Genetic Testing Registry GLTSCR1
NextProtQ9NZM4 [Medical]
TSGene29998
GENETestsGLTSCR1
Huge Navigator GLTSCR1 [HugePedia]
snp3D : Map Gene to Disease29998
BioCentury BCIQGLTSCR1
ClinGenGLTSCR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29998
Chemical/Pharm GKB GenePA28735
Clinical trialGLTSCR1
Miscellaneous
canSAR (ICR)GLTSCR1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLTSCR1
EVEXGLTSCR1
GoPubMedGLTSCR1
iHOPGLTSCR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:02:33 CEST 2017

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