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GLYAT (glycine-N-acyltransferase)

Identity

Alias_symbol (synonym)GAT
ACGNAT
Other aliasCAT
HGNC (Hugo) GLYAT
LocusID (NCBI) 10249
Atlas_Id 52524
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58710088 and ends at 58731974 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GLYAT (11q12.1) / NLRC5 (16q13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)GLYAT   13734
Cards
Entrez_Gene (NCBI)GLYAT  10249  glycine-N-acyltransferase
AliasesACGNAT; CAT; GAT
GeneCards (Weizmann)GLYAT
Ensembl hg19 (Hinxton)ENSG00000149124 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000149124 [Gene_View]  chr11:58710088-58731974 [Contig_View]  GLYAT [Vega]
ICGC DataPortalENSG00000149124
TCGA cBioPortalGLYAT
AceView (NCBI)GLYAT
Genatlas (Paris)GLYAT
WikiGenes10249
SOURCE (Princeton)GLYAT
Genetics Home Reference (NIH)GLYAT
Genomic and cartography
GoldenPath hg38 (UCSC)GLYAT  -     chr11:58710088-58731974 -  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLYAT  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblGLYAT - 11q12.1 [CytoView hg19]  GLYAT - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIGLYAT [Mapview hg19]  GLYAT [Mapview hg38]
OMIM607424   
Gene and transcription
Genbank (Entrez)AB013093 AB665285 AF023466 AI253073 AI793012
RefSeq transcript (Entrez)NM_005838 NM_201648
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLYAT
Cluster EST : UnigeneHs.145384 [ NCBI ]
CGAP (NCI)Hs.145384
Alternative Splicing GalleryENSG00000149124
Gene ExpressionGLYAT [ NCBI-GEO ]   GLYAT [ EBI - ARRAY_EXPRESS ]   GLYAT [ SEEK ]   GLYAT [ MEM ]
Gene Expression Viewer (FireBrowse)GLYAT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10249
GTEX Portal (Tissue expression)GLYAT
Human Protein AtlasENSG00000149124-GLYAT [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6IB77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6IB77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6IB77
Splice isoforms : SwissVarQ6IB77
PhosPhoSitePlusQ6IB77
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    Glycine_N-acyltransferase    Glycine_N-acyltransferase_C    Glycine_N-acyltransferase_N   
Domain families : Pfam (Sanger)Gly_acyl_tr_C (PF08444)    Gly_acyl_tr_N (PF06021)   
Domain families : Pfam (NCBI)pfam08444    pfam06021   
Conserved Domain (NCBI)GLYAT
DMDM Disease mutations10249
Blocks (Seattle)GLYAT
SuperfamilyQ6IB77
Human Protein Atlas [tissue]ENSG00000149124-GLYAT [tissue]
Peptide AtlasQ6IB77
HPRD07603
IPIIPI00402759   IPI00152012   
Protein Interaction databases
DIP (DOE-UCLA)Q6IB77
IntAct (EBI)Q6IB77
FunCoupENSG00000149124
BioGRIDGLYAT
STRING (EMBL)GLYAT
ZODIACGLYAT
Ontologies - Pathways
QuickGOQ6IB77
Ontology : AmiGOprotein binding  mitochondrion  mitochondrial matrix  glycine metabolic process  acyl-CoA metabolic process  xenobiotic metabolic process  response to toxic substance  transferase activity, transferring acyl groups  monocarboxylic acid metabolic process  glycine N-acyltransferase activity  glycine N-benzoyltransferase activity  glycine N-benzoyltransferase activity  extracellular exosome  
Ontology : EGO-EBIprotein binding  mitochondrion  mitochondrial matrix  glycine metabolic process  acyl-CoA metabolic process  xenobiotic metabolic process  response to toxic substance  transferase activity, transferring acyl groups  monocarboxylic acid metabolic process  glycine N-acyltransferase activity  glycine N-benzoyltransferase activity  glycine N-benzoyltransferase activity  extracellular exosome  
Pathways : KEGGPhenylalanine metabolism   
NDEx NetworkGLYAT
Atlas of Cancer Signalling NetworkGLYAT
Wikipedia pathwaysGLYAT
Orthology - Evolution
OrthoDB10249
GeneTree (enSembl)ENSG00000149124
Phylogenetic Trees/Animal Genes : TreeFamGLYAT
HOVERGENQ6IB77
HOGENOMQ6IB77
Homologs : HomoloGeneGLYAT
Homology/Alignments : Family Browser (UCSC)GLYAT
Gene fusions - Rearrangements
Fusion : MitelmanGLYAT/NLRC5 [11q12.1/16q13]  
Tumor Fusion PortalGLYAT
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLYAT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLYAT
dbVarGLYAT
ClinVarGLYAT
1000_GenomesGLYAT 
Exome Variant ServerGLYAT
ExAC (Exome Aggregation Consortium)ENSG00000149124
GNOMAD BrowserENSG00000149124
Genetic variants : HAPMAP10249
Genomic Variants (DGV)GLYAT [DGVbeta]
DECIPHERGLYAT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLYAT 
Mutations
ICGC Data PortalGLYAT 
TCGA Data PortalGLYAT 
Broad Tumor PortalGLYAT
OASIS PortalGLYAT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLYAT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLYAT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch GLYAT
DgiDB (Drug Gene Interaction Database)GLYAT
DoCM (Curated mutations)GLYAT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLYAT (select a term)
intoGenGLYAT
Cancer3DGLYAT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607424   
Orphanet
DisGeNETGLYAT
MedgenGLYAT
Genetic Testing Registry GLYAT
NextProtQ6IB77 [Medical]
TSGene10249
GENETestsGLYAT
Target ValidationGLYAT
Huge Navigator GLYAT [HugePedia]
snp3D : Map Gene to Disease10249
BioCentury BCIQGLYAT
ClinGenGLYAT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10249
Chemical/Pharm GKB GenePA28748
Clinical trialGLYAT
Miscellaneous
canSAR (ICR)GLYAT (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLYAT
EVEXGLYAT
GoPubMedGLYAT
iHOPGLYAT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:14:46 CET 2017

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