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GLYATL1 (glycine-N-acyltransferase like 1)

Identity

Alias_namesglycine-N-acyltransferase-like 1
Alias_symbol (synonym)MGC15397
FLJ34646
Other aliasGATF-C
GNAT
HGNC (Hugo) GLYATL1
LocusID (NCBI) 92292
Atlas_Id 63839
Location 11q12.1  [Link to chromosome band 11q12]
Location_base_pair Starts at 58927629 and ends at 58957074 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
FAM111B (11q12.1) / GLYATL1 (11q12.1)TAF6L (11q12.3) / GLYATL1 (11q12.1)TAF6L GLYATL1
FAM111B GLYATL1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

GeneTree (enSembl)
Nomenclature
HGNC (Hugo)GLYATL1   30519
Cards
Entrez_Gene (NCBI)GLYATL1  92292  glycine-N-acyltransferase like 1
AliasesGATF-C; GNAT
GeneCards (Weizmann)GLYATL1
Ensembl hg19 (Hinxton)ENSG00000166840 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166840 [Gene_View]  chr11:58927629-58957074 [Contig_View]  GLYATL1 [Vega]
ICGC DataPortalENSG00000166840
TcGA cRi´PortalGLYATL1
AceView (NCBI)GLYATL1
Genatlas (Paris)GLYATL1
WikiGenes92292
SOURCE (Princeton)GLYATL1
Genetics Home Reference (NIH)GLYATL1
Genomic and cartography
GoldenPath hg38 (UCSC)GLYATL1  -     chr11:58927629-58957074 +  11q12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)GLYATL1  -     11q12.1   [Description]    (hg19-Feb_2009)
EnsemblGLYATL1 - 11q12.1 [CytoView hg19]  GLYATL1 - 11q12.1 [CytoView hg38]
Mapping of homologs : NCBIGLYATL1 [Mapview hg19]  GLYATL1 [Mapview hg38]
OMIM614761   
Gene and transcription
Genbank (Entrez)AB207212 AF087878 AK055818 AK091965 AK130017
RefSeq transcript (Entrez)NM_001220494 NM_001220496 NM_080661
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)GLYATL1
Cluster EST : UnigeneHs.616909 [ NCBI ]
CGAP (NCI)Hs.616909
Alternative Splicing GalleryENSG00000166840
Gene ExpressionGLYATL1 [ NCBI-GEO ]   GLYATL1 [ EBI - ARRAY_EXPRESS ]   GLYATL1 [ SEEK ]   GLYATL1 [ MEM ]
Gene Expression Viewer (FireBrowse)GLYATL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92292
GTEX Portal (Tissue expression)GLYATL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969I3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969I3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969I3
Splice isoforms : SwissVarQ969I3
Catalytic activity : Enzyme2.3.1.68 [ Enzyme-Expasy ]   2.3.1.682.3.1.68 [ IntEnz-EBI ]   2.3.1.68 [ BRENDA ]   2.3.1.68 [ KEGG ]   
PhosPhoSitePlusQ969I3
Domains : Interpro (EBI)Acyl_CoA_acyltransferase    Glycine_N-acyltransferase    Glycine_N-acyltransferase_C    Glycine_N-acyltransferase_N   
Domain families : Pfam (Sanger)Gly_acyl_tr_C (PF08444)    Gly_acyl_tr_N (PF06021)   
Domain families : Pfam (NCBI)pfam08444    pfam06021   
Conserved Domain (NCBI)GLYATL1
DMDM Disease mutations92292
Blocks (Seattle)GLYATL1
SuperfamilyQ969I3
Human Protein AtlasENSG00000166840
Peptide AtlasQ969I3
HPRD14447
IPIIPI00056369   IPI00168156   IPI00910871   IPI00975484   IPI00983478   IPI00985364   IPI00977363   IPI00983654   IPI00984250   
Protein Interaction databases
DIP (DOE-UCLA)Q969I3
IntAct (EBI)Q969I3
FunCoupENSG00000166840
BioGRIDGLYATL1
STRING (EMBL)GLYATL1
ZODIACGLYATL1
Ontologies - Pathways
QuickGOQ969I3
Ontology : AmiGOmitochondrion  glutamine N-acyltransferase activity  glycine N-acyltransferase activity  
Ontology : EGO-EBImitochondrion  glutamine N-acyltransferase activity  glycine N-acyltransferase activity  
NDEx NetworkGLYATL1
Atlas of Cancer Signalling NetworkGLYATL1
Wikipedia pathwaysGLYATL1
Orthology - Evolution
OrthoDB92292
ENSG00000166840
Phylogenetic Trees/Animal Genes : TreeFamGLYATL1
HOVERGENQ969I3
HOGENOMQ969I3
Homologs : HomoloGeneGLYATL1
Homology/Alignments : Family Browser (UCSC)GLYATL1
Gene fusions - Rearrangements
Fusion: TCGATAF6L GLYATL1
Fusion: TCGAFAM111B GLYATL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerGLYATL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)GLYATL1
dbVarGLYATL1
ClinVarGLYATL1
1000_GenomesGLYATL1 
Exome Variant ServerGLYATL1
ExAC (Exome Aggregation Consortium)GLYATL1 (select the gene name)
Genetic variants : HAPMAP92292
Genomic Variants (DGV)GLYATL1 [DGVbeta]
DECIPHERGLYATL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisGLYATL1 
Mutations
ICGC Data PortalGLYATL1 
TCGA Data PortalGLYATL1 
Broad Tumor PortalGLYATL1
OASIS PortalGLYATL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICGLYATL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDGLYATL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch GLYATL1
DgiDB (Drug Gene Interaction Database)GLYATL1
DoCM (Curated mutations)GLYATL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)GLYATL1 (select a term)
intoGenGLYATL1
Cancer3DGLYATL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614761   
Orphanet
MedgenGLYATL1
Genetic Testing Registry GLYATL1
NextProtQ969I3 [Medical]
TSGene92292
GENETestsGLYATL1
Target ValidationGLYATL1
Huge Navigator GLYATL1 [HugePedia]
snp3D : Map Gene to Disease92292
BioCentury BCIQGLYATL1
ClinGenGLYATL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92292
Chemical/Pharm GKB GenePA142671727
Clinical trialGLYATL1
Miscellaneous
canSAR (ICR)GLYATL1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineGLYATL1
EVEXGLYATL1
GoPubMedGLYATL1
iHOPGLYATL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:09:29 CEST 2017

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